KEGG   PATHWAY: aoi00020
Entry
aoi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Amycolatopsis keratiniphila
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aoi00020  Citrate cycle (TCA cycle)
aoi00020

Module
aoi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aoi00020]
aoi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aoi00020]
aoi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aoi00020]
aoi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aoi00020]
aoi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aoi00020]
Other DBs
GO: 0006099
Organism
Amycolatopsis keratiniphila [GN:aoi]
Gene
AORI_7199  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
AORI_7233  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
AORI_3764  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
AORI_0837  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AORI_6764  kgd; 2-oxoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
AORI_5758  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AORI_1783  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AORI_0547  korA; 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AORI_0546  korB; 2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AORI_0796  sucD; succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
AORI_0795  sucC; succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
AORI_0857  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AORI_2338  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AORI_0856  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
AORI_2339  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
AORI_0859  sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
AORI_0858  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
AORI_2548  fumA; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
AORI_6884  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
AORI_4095  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AORI_6109  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AORI_7998  pckA; phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
AORI_5800  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
AORI_5759  sucB; 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aoi00010  Glycolysis / Gluconeogenesis
aoi00053  Ascorbate and aldarate metabolism
aoi00061  Fatty acid biosynthesis
aoi00071  Fatty acid degradation
aoi00190  Oxidative phosphorylation
aoi00220  Arginine biosynthesis
aoi00250  Alanine, aspartate and glutamate metabolism
aoi00280  Valine, leucine and isoleucine degradation
aoi00350  Tyrosine metabolism
aoi00470  D-Amino acid metabolism
aoi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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