KEGG   PATHWAY: aol00020
Entry
aol00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bradyrhizobium oligotrophicum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aol00020  Citrate cycle (TCA cycle)
aol00020

Module
aol_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aol00020]
aol_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aol00020]
aol_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aol00020]
aol_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aol00020]
aol_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aol00020]
Other DBs
GO: 0006099
Organism
Bradyrhizobium oligotrophicum [GN:aol]
Gene
S58_34670  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
S58_70240  putative citrate synthase [KO:K01647] [EC:2.3.3.1]
S58_70250  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
S58_04010  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
S58_48600  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
S58_04140  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
S58_04150  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
S58_04170  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
S58_35540  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
S58_52970  lipoamide dehydrogenase, E3 component is part of three enzyme complexes [KO:K00382] [EC:1.8.1.4]
S58_18180  2-oxoglutarate synthase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
S58_18170  putative 2-oxoglutarate synthase subunit B, korB-like protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
S58_04130  succinyl-CoA synthetase alpha subunit [KO:K01902] [EC:6.2.1.5]
S58_04120  succinyl-CoA synthetase beta subunit [KO:K01903] [EC:6.2.1.5]
S58_49060  putative acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
S58_02460  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
S58_02470  succinate dehydrogenase, Fe-S protein [KO:K00240] [EC:1.3.5.1]
S58_02440  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
S58_02450  succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
S58_26740  fumarase [KO:K01676] [EC:4.2.1.2]
S58_20210  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
S58_55810  fumarate hydratase (fumarase C),aerobic Class II [KO:K01679] [EC:4.2.1.2]
S58_04110  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
S58_68760  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
S58_51300  putative dehydrogenase [KO:K00163] [EC:1.2.4.1]
S58_53000  pyruvate dehydrogenase, decarboxylase component E1, thiamin-binding [KO:K00163] [EC:1.2.4.1]
S58_35500  pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
S58_35510  pyruvate dehydrogenase E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
S58_35530  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
S58_52990  pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aol00010  Glycolysis / Gluconeogenesis
aol00053  Ascorbate and aldarate metabolism
aol00061  Fatty acid biosynthesis
aol00071  Fatty acid degradation
aol00190  Oxidative phosphorylation
aol00220  Arginine biosynthesis
aol00250  Alanine, aspartate and glutamate metabolism
aol00280  Valine, leucine and isoleucine degradation
aol00350  Tyrosine metabolism
aol00470  D-Amino acid metabolism
aol00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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