KEGG   PATHWAY: arc00020
Entry
arc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Arcobacter sp. L
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
arc00020  Citrate cycle (TCA cycle)
arc00020

Module
arc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:arc00020]
arc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:arc00020]
arc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:arc00020]
Other DBs
GO: 0006099
Organism
Arcobacter sp. L [GN:arc]
Gene
ABLL_0453  citrate synthase [KO:K01647] [EC:2.3.3.1]
ABLL_0422  methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
ABLL_1914  aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ABLL_1391  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ABLL_1683  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ABLL_1091  2-oxoglutarate-acceptor oxidoreductase subunit OorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ABLL_1090  2-oxoglutarate-acceptor oxidoreductase subunit OorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ABLL_1089  2-oxoglutarate-acceptor oxidoreductase subunit OorC [KO:K00177] [EC:1.2.7.3]
ABLL_1092  2-oxoglutarate-acceptor oxidoreductase subunit OorD [KO:K00176] [EC:1.2.7.3]
ABLL_0443  fumarate reductase flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
ABLL_0442  fumarate reductase iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
ABLL_0444  fumarate reductase cytochrome b-556 subunit [KO:K25996]
ABLL_2359  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ABLL_0849  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ABLL_1390  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ABLL_2449  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ABLL_0648  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
ABLL_0738  acetyl CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
ABLL_0289  oxaloacetate decarboxylase alpha subunit [KO:K01960] [EC:6.4.1.1]
ABLL_1553  oxaloacetate decarboxylase alpha subunit [KO:K01960] [EC:6.4.1.1]
ABLL_1555  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ABLL_1681  pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
ABLL_1682  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
ABLL_0241  pyruvate flavodoxin oxidoreductase alpha subunit [KO:K00169] [EC:1.2.7.1]
ABLL_0240  pyruvate flavodoxin oxidoreductase beta subunit [KO:K00170] [EC:1.2.7.1]
ABLL_0242  pyruvate flavodoxin oxidoreductase delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
arc00010  Glycolysis / Gluconeogenesis
arc00061  Fatty acid biosynthesis
arc00071  Fatty acid degradation
arc00190  Oxidative phosphorylation
arc00220  Arginine biosynthesis
arc00250  Alanine, aspartate and glutamate metabolism
arc00280  Valine, leucine and isoleucine degradation
arc00350  Tyrosine metabolism
arc00470  D-Amino acid metabolism
arc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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