KEGG   PATHWAY: arj00020
Entry
arj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acinetobacter radioresistens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
arj00020  Citrate cycle (TCA cycle)
arj00020

Module
arj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:arj00020]
arj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:arj00020]
arj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:arj00020]
arj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:arj00020]
arj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:arj00020]
Other DBs
GO: 0006099
Organism
Acinetobacter radioresistens [GN:arj]
Gene
DOM24_03465  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DOM24_02355  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DOM24_05150  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
DOM24_04230  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DOM24_04245  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DOM24_03490  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DOM24_03495  2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
DOM24_05470  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DOM24_03500  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DOM24_12390  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DOM24_03510  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DOM24_03505  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DOM24_13365  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
DOM24_03480  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DOM24_03485  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DOM24_03470  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DOM24_03475  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
DOM24_02025  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
DOM24_06375  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DOM24_12455  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DOM24_03700  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
DOM24_13715  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DOM24_05465  diaminohydroxyphosphoribosylaminopyrimidine deaminase [KO:K00627] [EC:2.3.1.12]
DOM24_13710  pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
arj00010  Glycolysis / Gluconeogenesis
arj00061  Fatty acid biosynthesis
arj00071  Fatty acid degradation
arj00190  Oxidative phosphorylation
arj00220  Arginine biosynthesis
arj00250  Alanine, aspartate and glutamate metabolism
arj00280  Valine, leucine and isoleucine degradation
arj00350  Tyrosine metabolism
arj00470  D-Amino acid metabolism
arj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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