KEGG   PATHWAY: asa00020
Entry
asa00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aeromonas salmonicida subsp. salmonicida A449
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
asa00020  Citrate cycle (TCA cycle)
asa00020

Module
asa_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:asa00020]
asa_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:asa00020]
asa_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:asa00020]
asa_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:asa00020]
asa_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:asa00020]
Other DBs
GO: 0006099
Organism
Aeromonas salmonicida subsp. salmonicida A449 [GN:asa]
Gene
ASA_2362  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
ASA_0427  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ASA_2942  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
ASA_3183  isocitrate dehydrogenase, NAD-dependent [KO:K00030] [EC:1.1.1.41]
ASA_2357  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
ASA_2356  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
ASA_0421  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ASA_2354  sucD; succinyl-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
ASA_2355  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
ASA_2359  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ASA_2358  sdhB; succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
ASA_2361  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
ASA_2360  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
ASA_1105  frdA; fumarate reductase, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
ASA_1104  frdB; fumarate reductase, iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
ASA_1103  frdC; fumarate reductase, 15 kDa hydrophobic protein [KO:K00246]
ASA_1102  frdD; fumarate reductase, 13 kDa hydrophobic protein [KO:K00247]
ASA_2292  fumB; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
ASA_1019  fumC; Fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
ASA_0659  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ASA_3771  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ASA_0419  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
ASA_0420  aceF; pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
ASA_1140  pyruvate ferrodoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
asa00010  Glycolysis / Gluconeogenesis
asa00053  Ascorbate and aldarate metabolism
asa00061  Fatty acid biosynthesis
asa00071  Fatty acid degradation
asa00190  Oxidative phosphorylation
asa00220  Arginine biosynthesis
asa00250  Alanine, aspartate and glutamate metabolism
asa00280  Valine, leucine and isoleucine degradation
asa00350  Tyrosine metabolism
asa00470  D-Amino acid metabolism
asa00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system