KEGG   PATHWAY: aseg00020
Entry
aseg00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Aggregatibacter segnis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aseg00020  Citrate cycle (TCA cycle)
aseg00020

Module
aseg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aseg00020]
aseg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aseg00020]
aseg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aseg00020]
Other DBs
GO: 0006099
Organism
Aggregatibacter segnis [GN:aseg]
Gene
NCTC10977_01102  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NCTC10977_01103  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
NCTC10977_01292  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC10977_01105  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
NCTC10977_01104  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
NCTC10977_01004  frdA; Fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
NCTC10977_01003  frdB; Fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
NCTC10977_01002  frdC; Fumarate reductase 15 kDa hydrophobic protein [KO:K00246]
NCTC10977_01001  frdD; Fumarate reductase 13 kDa hydrophobic protein [KO:K00247]
NCTC10977_01799  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
NCTC10977_01576  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NCTC10977_00170  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
NCTC10977_01290  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
NCTC10977_01291  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aseg00010  Glycolysis / Gluconeogenesis
aseg00061  Fatty acid biosynthesis
aseg00071  Fatty acid degradation
aseg00190  Oxidative phosphorylation
aseg00220  Arginine biosynthesis
aseg00250  Alanine, aspartate and glutamate metabolism
aseg00280  Valine, leucine and isoleucine degradation
aseg00350  Tyrosine metabolism
aseg00470  D-Amino acid metabolism
aseg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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