KEGG   PATHWAY: asim00020
Entry
asim00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Aeromonas simiae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
asim00020  Citrate cycle (TCA cycle)
asim00020

Module
asim_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:asim00020]
asim_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:asim00020]
asim_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:asim00020]
asim_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:asim00020]
asim_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:asim00020]
Other DBs
GO: 0006099
Organism
Aeromonas simiae [GN:asim]
Gene
FE240_07060  citrate synthase [KO:K01647] [EC:2.3.3.1]
FE240_14090  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
FE240_06175  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FE240_12310  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
FE240_07085  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FE240_07090  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FE240_14110  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FE240_07100  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FE240_07095  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FE240_07075  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FE240_07080  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FE240_07065  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
FE240_07070  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
FE240_02515  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
FE240_02510  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
FE240_02505  fumarate reductase subunit C [KO:K00246]
FE240_02500  frdD; fumarate reductase subunit FrdD [KO:K00247]
FE240_07135  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FE240_13565  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FE240_16080  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FE240_00450  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FE240_14120  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
FE240_14115  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
FE240_12150  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
asim00010  Glycolysis / Gluconeogenesis
asim00053  Ascorbate and aldarate metabolism
asim00061  Fatty acid biosynthesis
asim00071  Fatty acid degradation
asim00190  Oxidative phosphorylation
asim00220  Arginine biosynthesis
asim00250  Alanine, aspartate and glutamate metabolism
asim00280  Valine, leucine and isoleucine degradation
asim00350  Tyrosine metabolism
asim00470  D-Amino acid metabolism
asim00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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