KEGG   PATHWAY: asr00020
Entry
asr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aeromonas schubertii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
asr00020  Citrate cycle (TCA cycle)
asr00020

Module
asr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:asr00020]
asr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:asr00020]
asr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:asr00020]
asr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:asr00020]
asr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:asr00020]
Other DBs
GO: 0006099
Organism
Aeromonas schubertii [GN:asr]
Gene
WL1483_1296  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
WL1483_3119  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
WL1483_3527  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
WL1483_4388  idh5; isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
WL1483_1322  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
WL1483_1912  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
WL1483_2426  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
WL1483_650  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
WL1483_944  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
WL1483_2898  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
WL1483_1465  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
WL1483_4150  sdhC; succinate dehydrogenase cytochrome b556 large membrane subunit [KO:K00241]
WL1483_2727  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
WL1483_3443  frdA; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
WL1483_1030  frdB; fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
WL1483_3934  frdC; fumarate reductase [KO:K00246]
WL1483_1918  frdD; fumarate reductase subunit D [KO:K00247]
WL1483_3139  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
WL1483_240  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
WL1483_532  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
WL1483_2434  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
WL1483_2950  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
WL1483_3102  nifJ; ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
asr00010  Glycolysis / Gluconeogenesis
asr00053  Ascorbate and aldarate metabolism
asr00061  Fatty acid biosynthesis
asr00071  Fatty acid degradation
asr00190  Oxidative phosphorylation
asr00220  Arginine biosynthesis
asr00250  Alanine, aspartate and glutamate metabolism
asr00280  Valine, leucine and isoleucine degradation
asr00350  Tyrosine metabolism
asr00470  D-Amino acid metabolism
asr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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