KEGG   PATHWAY: asub00020
Entry
asub00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Atlantibacter subterranea
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
asub00020  Citrate cycle (TCA cycle)
asub00020

Module
asub_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:asub00020]
asub_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:asub00020]
asub_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:asub00020]
asub_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:asub00020]
asub_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:asub00020]
Other DBs
GO: 0006099
Organism
Atlantibacter subterranea [GN:asub]
Gene
NLZ15_07160  citrate synthase [KO:K01647] [EC:2.3.3.1]
NLZ15_09705  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
NLZ15_18215  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NLZ15_12430  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
NLZ15_07185  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NLZ15_07190  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
NLZ15_18235  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NLZ15_07200  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
NLZ15_07195  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
NLZ15_07175  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
NLZ15_07180  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
NLZ15_07165  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
NLZ15_07170  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
NLZ15_20115  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
NLZ15_20120  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
NLZ15_20125  frdC; fumarate reductase subunit FrdC [KO:K00246]
NLZ15_20130  frdD; fumarate reductase subunit FrdD [KO:K00247]
NLZ15_11680  fumA; class I fumarate hydratase FumA [KO:K01676] [EC:4.2.1.2]
NLZ15_11675  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
NLZ15_11930  fumD; fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
NLZ15_02275  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NLZ15_01540  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
NLZ15_18245  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
NLZ15_18240  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
NLZ15_09940  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
asub00010  Glycolysis / Gluconeogenesis
asub00053  Ascorbate and aldarate metabolism
asub00061  Fatty acid biosynthesis
asub00071  Fatty acid degradation
asub00190  Oxidative phosphorylation
asub00220  Arginine biosynthesis
asub00250  Alanine, aspartate and glutamate metabolism
asub00280  Valine, leucine and isoleucine degradation
asub00350  Tyrosine metabolism
asub00470  D-Amino acid metabolism
asub00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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