KEGG   PATHWAY: asui00020
Entry
asui00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Arcobacter suis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
asui00020  Citrate cycle (TCA cycle)
asui00020

Module
asui_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:asui00020]
asui_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:asui00020]
asui_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:asui00020]
Other DBs
GO: 0006099
Organism
Arcobacter suis [GN:asui]
Gene
ASUIS_0398  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
ASUIS_0363  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
ASUIS_1059  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ASUIS_1234  icd; isocitrate dehydrogenase, monomeric [KO:K00031] [EC:1.1.1.42]
ASUIS_1610  lpdA; pyruvate dehydrogenase multienzyme complex, E3 component dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ASUIS_1713  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ASUIS_1714  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ASUIS_1715  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
ASUIS_1712  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
ASUIS_0095  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ASUIS_0388  frdA; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
ASUIS_0387  frdB; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
ASUIS_0389  frdC; fumarate reductase, cytochrome b subunit [KO:K25996]
ASUIS_2145  fumA; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
ASUIS_0500  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
ASUIS_1615  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
ASUIS_0630  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
ASUIS_0705  pycA; pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
ASUIS_1325  oadA2; oxaloacetate decarboxylase, alpha subunit [KO:K01960] [EC:6.4.1.1]
ASUIS_0229  oadA1; oxaloacetate decarboxylase, alpha subunit [KO:K01960] [EC:6.4.1.1]
ASUIS_1327  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
ASUIS_1612  aceE; pyruvate dehydrogenase multienzyme complex, E1 component pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
ASUIS_1611  aceF; pyruvate dehydrogenase multienzyme complex, E2 component dihydrolipoyl transacetylase [KO:K00627] [EC:2.3.1.12]
ASUIS_0180  porA; pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
ASUIS_0179  porB; pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
ASUIS_0182  porG; pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
ASUIS_0181  porD; pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
asui00010  Glycolysis / Gluconeogenesis
asui00061  Fatty acid biosynthesis
asui00071  Fatty acid degradation
asui00190  Oxidative phosphorylation
asui00220  Arginine biosynthesis
asui00250  Alanine, aspartate and glutamate metabolism
asui00280  Valine, leucine and isoleucine degradation
asui00350  Tyrosine metabolism
asui00470  D-Amino acid metabolism
asui00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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