KEGG   PATHWAY: asx00020
Entry
asx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Alkalitalea saponilacus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
asx00020  Citrate cycle (TCA cycle)
asx00020

Module
asx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:asx00020]
asx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:asx00020]
asx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:asx00020]
asx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:asx00020]
Other DBs
GO: 0006099
Organism
Alkalitalea saponilacus [GN:asx]
Gene
CDL62_05565  citrate synthase [KO:K01647] [EC:2.3.3.1]
CDL62_04490  type I citrate synthase [KO:K01647] [EC:2.3.3.1]
CDL62_03160  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CDL62_16165  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CDL62_16630  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CDL62_13420  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CDL62_13425  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
CDL62_16615  diapophytoene dehydrogenase [KO:K00658] [EC:2.3.1.61]
CDL62_04240  pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
CDL62_02180  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CDL62_02380  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CDL62_04920  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CDL62_01475  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CDL62_04925  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CDL62_01470  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CDL62_01465  2-oxoglutarate ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
CDL62_01480  ferredoxin [KO:K00176] [EC:1.2.7.3]
CDL62_16250  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CDL62_02350  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CDL62_09130  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CDL62_09125  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
CDL62_09135  succinate dehydrogenase [KO:K00241]
CDL62_15820  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CDL62_07040  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CDL62_03995  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CDL62_18410  oxaloacetate decarboxylase [KO:K01960] [EC:6.4.1.1]
CDL62_02185  hypothetical protein [KO:K00627] [EC:2.3.1.12]
CDL62_13540  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
asx00010  Glycolysis / Gluconeogenesis
asx00053  Ascorbate and aldarate metabolism
asx00061  Fatty acid biosynthesis
asx00190  Oxidative phosphorylation
asx00220  Arginine biosynthesis
asx00250  Alanine, aspartate and glutamate metabolism
asx00280  Valine, leucine and isoleucine degradation
asx00350  Tyrosine metabolism
asx00470  D-Amino acid metabolism
asx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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