KEGG   PATHWAY: atk00020
Entry
atk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aureibacter tunicatorum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
atk00020  Citrate cycle (TCA cycle)
atk00020

Module
atk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:atk00020]
atk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:atk00020]
atk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:atk00020]
atk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:atk00020]
atk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:atk00020]
Other DBs
GO: 0006099
Organism
Aureibacter tunicatorum [GN:atk]
Gene
AUTU_15300  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
AUTU_15450  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AUTU_25800  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AUTU_02380  leuB_2; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AUTU_22330  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
AUTU_38610  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
AUTU_11780  bfmBB; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
AUTU_38600  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
AUTU_35720  lpdA2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AUTU_38590  lpdA1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AUTU_28170  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
AUTU_17920  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
AUTU_17020  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AUTU_17010  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AUTU_17030  succinate dehydrogenase [KO:K00241]
AUTU_22790  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
AUTU_04550  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
AUTU_00980  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AUTU_21500  pckA2; phosphoenolpyruvate carboxykinase [ATP] 2 [KO:K01610] [EC:4.1.1.49]
AUTU_37900  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
AUTU_06960  pdhB; pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
AUTU_18730  pdhC; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
atk00010  Glycolysis / Gluconeogenesis
atk00053  Ascorbate and aldarate metabolism
atk00061  Fatty acid biosynthesis
atk00071  Fatty acid degradation
atk00190  Oxidative phosphorylation
atk00220  Arginine biosynthesis
atk00250  Alanine, aspartate and glutamate metabolism
atk00280  Valine, leucine and isoleucine degradation
atk00350  Tyrosine metabolism
atk00470  D-Amino acid metabolism
atk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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