KEGG   PATHWAY: atn00020
Entry
atn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acinetobacter tandoii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
atn00020  Citrate cycle (TCA cycle)
atn00020

Module
atn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:atn00020]
atn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:atn00020]
atn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:atn00020]
atn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:atn00020]
atn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:atn00020]
Other DBs
GO: 0006099
Organism
Acinetobacter tandoii [GN:atn]
Gene
FM020_11685  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
FM020_01885  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FM020_07115  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
FM020_10390  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FM020_11660  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FM020_11655  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FM020_01435  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FM020_05855  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FM020_11650  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FM020_11640  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FM020_11645  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FM020_00390  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
FM020_11670  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FM020_11665  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FM020_11680  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
FM020_11675  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
FM020_13480  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FM020_07785  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FM020_01365  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FM020_10025  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
FM020_03360  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
FM020_16605  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
FM020_05850  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
FM020_16610  biotin/lipoyl-binding protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
atn00010  Glycolysis / Gluconeogenesis
atn00053  Ascorbate and aldarate metabolism
atn00061  Fatty acid biosynthesis
atn00062  Fatty acid elongation
atn00071  Fatty acid degradation
atn00190  Oxidative phosphorylation
atn00220  Arginine biosynthesis
atn00250  Alanine, aspartate and glutamate metabolism
atn00280  Valine, leucine and isoleucine degradation
atn00350  Tyrosine metabolism
atn00470  D-Amino acid metabolism
atn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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