KEGG   PATHWAY: ats00020
Entry
ats00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aegilops tauschii (wheat D)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ats00020  Citrate cycle (TCA cycle)
ats00020

Module
ats_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ats00020]
ats_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ats00020]
ats_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ats00020]
ats_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ats00020]
ats_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ats00020]
Other DBs
GO: 0006099
Organism
Aegilops tauschii (wheat D) [GN:ats]
Gene
109742699  citrate synthase 4, mitochondrial-like [KO:K01647] [EC:2.3.3.1]
109773224  citrate synthase 3, peroxisomal-like [KO:K01647] [EC:2.3.3.1]
109778001  ATP-citrate synthase beta chain protein 1 [KO:K01648] [EC:2.3.3.8]
109752526  ATP-citrate synthase alpha chain protein 3 [KO:K01648] [EC:2.3.3.8]
109782165  ATP-citrate synthase beta chain protein 1-like [KO:K01648] [EC:2.3.3.8]
109750159  ATP-citrate synthase alpha chain protein 2 [KO:K01648] [EC:2.3.3.8]
109738732  putative aconitate hydratase, cytoplasmic isoform X1 [KO:K01681] [EC:4.2.1.3]
109761903  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
109735417  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
109764785  putative aconitate hydratase, cytoplasmic [KO:K01681] [EC:4.2.1.3]
109741022  cytosolic isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
109786419  isocitrate dehydrogenase [NADP]-like [KO:K00031] [EC:1.1.1.42]
109784248  cytosolic isocitrate dehydrogenase [NADP] isoform X1 [KO:K00031] [EC:1.1.1.42]
109758292  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
109772564  isocitrate dehydrogenase [NAD] catalytic subunit 5, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
109773327  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [KO:K00030] [EC:1.1.1.41]
109784280  isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
109731841  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
109743671  2-oxoglutarate dehydrogenase, mitochondrial-like [KO:K00164] [EC:1.2.4.2]
109744323  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
109778526  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
109770946  leghemoglobin reductase-like [KO:K00382] [EC:1.8.1.4]
109767106  dihydrolipoyl dehydrogenase 1, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
109767658  dihydrolipoyl dehydrogenase 2, chloroplastic-like [KO:K00382] [EC:1.8.1.4]
109764550  succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial [KO:K01899] [EC:6.2.1.4 6.2.1.5]
109744727  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [KO:K01900] [EC:6.2.1.4 6.2.1.5]
109757946  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial [KO:K00234] [EC:1.3.5.1]
109753010  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
109763002  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [KO:K00235] [EC:1.3.5.1]
109762674  succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial isoform X1 [KO:K00235] [EC:1.3.5.1]
109759963  succinate dehydrogenase subunit 3-2, mitochondrial-like [KO:K00236]
109747450  succinate dehydrogenase subunit 3-2, mitochondrial-like [KO:K00236]
109785405  succinate dehydrogenase subunit 4, mitochondrial-like [KO:K25801]
109785804  succinate dehydrogenase subunit 4, mitochondrial-like [KO:K25801]
109755788  fumarate hydratase 1, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
109742567  malate dehydrogenase, cytoplasmic [KO:K00025] [EC:1.1.1.37]
109749008  malate dehydrogenase, glyoxysomal [KO:K00026] [EC:1.1.1.37]
109751657  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
109782175  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
109784558  malate dehydrogenase, glyoxysomal-like [KO:K00026] [EC:1.1.1.37]
109772367  malate dehydrogenase, chloroplastic-like [KO:K00026] [EC:1.1.1.37]
109759790  malate dehydrogenase 1, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
109761682  phosphoenolpyruvate carboxykinase (ATP)-like [KO:K01610] [EC:4.1.1.49]
109773352  pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial [KO:K00161] [EC:1.2.4.1]
109733828  pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [KO:K00161] [EC:1.2.4.1]
109773255  pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial [KO:K00161] [EC:1.2.4.1]
109781787  pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic-like [KO:K00162] [EC:1.2.4.1]
109785355  pyruvate dehydrogenase E1 component subunit beta-4, chloroplastic [KO:K00162] [EC:1.2.4.1]
109774306  pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial [KO:K00162] [EC:1.2.4.1]
109736067  pyruvate dehydrogenase E1 component subunit beta-2, mitochondrial [KO:K00162] [EC:1.2.4.1]
109750610  dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
109784254  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like [KO:K00627] [EC:2.3.1.12]
109752264  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
109766151  dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial-like isoform X1 [KO:K00627] [EC:2.3.1.12]
109737392  dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial isoform X1 [KO:K00627] [EC:2.3.1.12]
109772031  dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic-like isoform X1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ats00010  Glycolysis / Gluconeogenesis
ats00053  Ascorbate and aldarate metabolism
ats00061  Fatty acid biosynthesis
ats00062  Fatty acid elongation
ats00071  Fatty acid degradation
ats00190  Oxidative phosphorylation
ats00220  Arginine biosynthesis
ats00250  Alanine, aspartate and glutamate metabolism
ats00280  Valine, leucine and isoleucine degradation
ats00350  Tyrosine metabolism
ats00470  D-Amino acid metabolism
ats00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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