KEGG   PATHWAY: att00020
Entry
att00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acinetobacter sp. TTH0-4
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
att00020  Citrate cycle (TCA cycle)
att00020

Module
att_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:att00020]
att_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:att00020]
att_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:att00020]
att_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:att00020]
att_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:att00020]
Other DBs
GO: 0006099
Organism
Acinetobacter sp. TTH0-4 [GN:att]
Gene
AMQ28_12220  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AMQ28_00990  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AMQ28_01200  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AMQ28_13315  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AMQ28_12980  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AMQ28_12250  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
AMQ28_12255  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AMQ28_12260  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AMQ28_12270  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
AMQ28_12265  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AMQ28_09510  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
AMQ28_12235  fumarate reductase [KO:K00239] [EC:1.3.5.1]
AMQ28_12240  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
AMQ28_12225  succinate dehydrogenase [KO:K00241]
AMQ28_12230  succinate dehydrogenase [KO:K00242]
AMQ28_05500  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AMQ28_00370  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AMQ28_10480  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AMQ28_12335  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
AMQ28_08655  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AMQ28_08660  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
att00010  Glycolysis / Gluconeogenesis
att00053  Ascorbate and aldarate metabolism
att00061  Fatty acid biosynthesis
att00071  Fatty acid degradation
att00190  Oxidative phosphorylation
att00220  Arginine biosynthesis
att00250  Alanine, aspartate and glutamate metabolism
att00280  Valine, leucine and isoleucine degradation
att00350  Tyrosine metabolism
att00470  D-Amino acid metabolism
att00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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