KEGG   PATHWAY: aviv00020
Entry
aviv00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Acinetobacter vivianii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
aviv00020  Citrate cycle (TCA cycle)
aviv00020

Module
aviv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:aviv00020]
aviv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:aviv00020]
aviv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:aviv00020]
aviv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:aviv00020]
aviv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:aviv00020]
Other DBs
GO: 0006099
Organism
Acinetobacter vivianii [GN:aviv]
Gene
LF296_14400  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
LF296_02975  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
LF296_10130  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LF296_13720  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LF296_13735  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LF296_14370  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LF296_14365  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LF296_14360  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LF296_14350  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LF296_14355  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LF296_01170  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
LF296_14385  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LF296_14380  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LF296_14395  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
LF296_14390  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
LF296_02470  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LF296_08070  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LF296_15995  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LF296_03915  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
LF296_08805  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
LF296_13985  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
LF296_00785  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
LF296_00790  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
aviv00010  Glycolysis / Gluconeogenesis
aviv00053  Ascorbate and aldarate metabolism
aviv00061  Fatty acid biosynthesis
aviv00071  Fatty acid degradation
aviv00190  Oxidative phosphorylation
aviv00220  Arginine biosynthesis
aviv00250  Alanine, aspartate and glutamate metabolism
aviv00280  Valine, leucine and isoleucine degradation
aviv00350  Tyrosine metabolism
aviv00470  D-Amino acid metabolism
aviv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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