KEGG   PATHWAY: avp00020
Entry
avp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Arcobacter venerupis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
avp00020  Citrate cycle (TCA cycle)
avp00020

Module
avp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:avp00020]
avp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:avp00020]
avp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:avp00020]
Other DBs
GO: 0006099
Organism
Arcobacter venerupis [GN:avp]
Gene
AVENP_0466  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
AVENP_0425  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
AVENP_1219  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AVENP_1476  icd; isocitrate dehydrogenase, monomeric [KO:K00031] [EC:1.1.1.42]
AVENP_1897  lpdA; pyruvate dehydrogenase multienzyme complex, E3 component dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AVENP_2054  oorA; 2-oxoglutarate:acceptor oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AVENP_2055  oorB; 2-oxoglutarate:acceptor oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AVENP_2056  oorC; 2-oxoglutarate:acceptor oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
AVENP_2053  oorD; 2-oxoglutarate:acceptor oxidoreductase, delta subunit [KO:K00176] [EC:1.2.7.3]
AVENP_2880  frdA2; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
AVENP_0456  frdA1; fumarate reductase, flavoprotein subunit [KO:K00233] [EC:1.3.5.1 7.1.1.12]
AVENP_2879  frdB2; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
AVENP_0455  frdB1; fumarate reductase, iron-sulfur subunit [KO:K25995] [EC:1.3.5.1 7.1.1.12]
AVENP_0457  frdC1; fumarate reductase, cytochrome b subunit [KO:K25996]
AVENP_2881  frdC2; fumarate reductase, cytochrome b subunit [KO:K25996]
AVENP_2540  fumA; fumarate hydratase, class I [KO:K01676] [EC:4.2.1.2]
AVENP_0599  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
AVENP_1902  mdh; malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
AVENP_0766  mqo; malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
AVENP_0857  pycA; pyruvate carboxylase, subunit A [KO:K01959] [EC:6.4.1.1]
AVENP_0293  oadA1; oxaloacetate decarboxylase, alpha subunit [KO:K01960] [EC:6.4.1.1]
AVENP_1592  oadA2; oxaloacetate decarboxylase, alpha subunit [KO:K01960] [EC:6.4.1.1]
AVENP_1590  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
AVENP_1899  aceE; pyruvate dehydrogenase multienzyme complex, E1 component pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AVENP_1898  aceF; pyruvate dehydrogenase multienzyme complex, E2 component dihydrolipoyl transacetylase [KO:K00627] [EC:2.3.1.12]
AVENP_0235  porA; pyruvate:ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
AVENP_0234  porB; pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
AVENP_0237  porG; pyruvate:ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
AVENP_0236  porD; pyruvate:ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
avp00010  Glycolysis / Gluconeogenesis
avp00061  Fatty acid biosynthesis
avp00071  Fatty acid degradation
avp00190  Oxidative phosphorylation
avp00220  Arginine biosynthesis
avp00250  Alanine, aspartate and glutamate metabolism
avp00280  Valine, leucine and isoleucine degradation
avp00350  Tyrosine metabolism
avp00470  D-Amino acid metabolism
avp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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