KEGG   PATHWAY: avt00020
Entry
avt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Avibacterium volantium
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
avt00020  Citrate cycle (TCA cycle)
avt00020

Module
avt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:avt00020]
avt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:avt00020]
avt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:avt00020]
avt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:avt00020]
avt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:avt00020]
Other DBs
GO: 0006099
Organism
Avibacterium volantium [GN:avt]
Gene
NCTC3438_01610  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
NCTC3438_01656  acnB; Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
NCTC3438_00551  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
NCTC3438_01609  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
NCTC3438_01608  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
NCTC3438_01508  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
NCTC3438_01606  sucD; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
NCTC3438_01607  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
NCTC3438_01848  frdA; Fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
NCTC3438_01849  frdB; Fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
NCTC3438_01850  frdC; Fumarate reductase 15 kDa hydrophobic protein [KO:K00246]
NCTC3438_01851  frdD; Fumarate reductase 13 kDa hydrophobic protein [KO:K00247]
NCTC3438_01202  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
NCTC3438_01540  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
NCTC3438_00148  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
NCTC3438_01510  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
NCTC3438_01509  aceF; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
avt00010  Glycolysis / Gluconeogenesis
avt00061  Fatty acid biosynthesis
avt00071  Fatty acid degradation
avt00190  Oxidative phosphorylation
avt00220  Arginine biosynthesis
avt00250  Alanine, aspartate and glutamate metabolism
avt00280  Valine, leucine and isoleucine degradation
avt00350  Tyrosine metabolism
avt00470  D-Amino acid metabolism
avt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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