KEGG   PATHWAY: awd00020
Entry
awd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aliivibrio wodanis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
awd00020  Citrate cycle (TCA cycle)
awd00020

Module
awd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:awd00020]
awd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:awd00020]
awd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:awd00020]
awd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:awd00020]
awd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:awd00020]
Other DBs
GO: 0006099
Organism
Aliivibrio wodanis [GN:awd]
Gene
AWOD_I_0785  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
AWOD_I_0437  acnB; aconitate hydratase 2 (citrate hydro-lyase 2) [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AWOD_I_1898  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
AWOD_I_0790  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AWOD_I_0791  sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
AWOD_I_0418  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AWOD_I_0299  dihydrolipoyl dehydrogenase (dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
AWOD_I_0793  sucD; succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
AWOD_I_0792  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
AWOD_I_0788  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AWOD_I_0789  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
AWOD_I_0786  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
AWOD_I_0787  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
AWOD_I_0266  fumarate reductase complex, flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
AWOD_I_0265  frdB; fumarate reductase complex, iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
AWOD_I_0264  frdC; fumarate reductase complex, membrane anchor subunit C [KO:K00246]
AWOD_I_0263  frdD; fumarate reductase complex, membrane anchor subunit D [KO:K00247]
AWOD_I_1168  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
AWOD_I_2402  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AWOD_I_2561  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AWOD_I_0416  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
AWOD_I_0417  aceF; dihydrolipoyllysine-residue acetyltransferase component of pyruvat dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
awd00010  Glycolysis / Gluconeogenesis
awd00053  Ascorbate and aldarate metabolism
awd00061  Fatty acid biosynthesis
awd00071  Fatty acid degradation
awd00190  Oxidative phosphorylation
awd00220  Arginine biosynthesis
awd00250  Alanine, aspartate and glutamate metabolism
awd00280  Valine, leucine and isoleucine degradation
awd00350  Tyrosine metabolism
awd00470  D-Amino acid metabolism
awd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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