KEGG   PATHWAY: awu00020
Entry
awu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Acinetobacter wuhouensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
awu00020  Citrate cycle (TCA cycle)
awu00020

Module
awu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:awu00020]
awu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:awu00020]
awu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:awu00020]
awu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:awu00020]
awu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:awu00020]
Other DBs
GO: 0006099
Organism
Acinetobacter wuhouensis [GN:awu]
Gene
BEN71_13665  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BEN71_08795  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BEN71_06175  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BEN71_06205  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BEN71_13640  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BEN71_13635  2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
BEN71_13150  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BEN71_13630  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BEN71_03300  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BEN71_13620  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BEN71_13625  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BEN71_17400  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
BEN71_07975  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
BEN71_13650  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BEN71_13645  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BEN71_13660  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BEN71_13655  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BEN71_03485  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BEN71_09615  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BEN71_03230  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BEN71_05455  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
BEN71_01390  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
BEN71_13155  diaminohydroxyphosphoribosylaminopyrimidine deaminase [KO:K00627] [EC:2.3.1.12]
BEN71_01395  biotin/lipoyl-binding protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
awu00010  Glycolysis / Gluconeogenesis
awu00053  Ascorbate and aldarate metabolism
awu00061  Fatty acid biosynthesis
awu00071  Fatty acid degradation
awu00190  Oxidative phosphorylation
awu00220  Arginine biosynthesis
awu00250  Alanine, aspartate and glutamate metabolism
awu00280  Valine, leucine and isoleucine degradation
awu00350  Tyrosine metabolism
awu00470  D-Amino acid metabolism
awu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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