KEGG   PATHWAY: axn00020
Entry
axn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Achromobacter xylosoxidans NBRC 15126 = ATCC 27061
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
axn00020  Citrate cycle (TCA cycle)
axn00020

Module
axn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:axn00020]
axn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:axn00020]
axn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:axn00020]
axn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:axn00020]
axn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:axn00020]
Other DBs
GO: 0006099
Organism
Achromobacter xylosoxidans NBRC 15126 = ATCC 27061 [GN:axn]
Gene
AX27061_1541  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
AX27061_3252  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
AX27061_5481  Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
AX27061_5651  putative Citrate synthase [KO:K01647] [EC:2.3.3.1]
AX27061_4284  Aconitate hydratase / 2-methylisocitrate dehydratase [KO:K01681] [EC:4.2.1.3]
AX27061_5113  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AX27061_4706  Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AX27061_2985  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AX27061_1226  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AX27061_1552  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AX27061_1553  Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
AX27061_1554  Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
AX27061_5604  Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
AX27061_2361  Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase [KO:K00382] [EC:1.8.1.4]
AX27061_2412  Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
AX27061_2652  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AX27061_1758  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
AX27061_1757  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
AX27061_4685  Acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
AX27061_1538  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AX27061_1539  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
AX27061_1536  Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
AX27061_1537  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
AX27061_5473  Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
AX27061_0898  Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
AX27061_0931  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
AX27061_1534  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AX27061_2926  Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AX27061_2203  Phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
AX27061_1545  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
AX27061_2410  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
AX27061_2188  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
AX27061_5603  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
AX27061_2411  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
axn00010  Glycolysis / Gluconeogenesis
axn00053  Ascorbate and aldarate metabolism
axn00061  Fatty acid biosynthesis
axn00071  Fatty acid degradation
axn00190  Oxidative phosphorylation
axn00220  Arginine biosynthesis
axn00250  Alanine, aspartate and glutamate metabolism
axn00280  Valine, leucine and isoleucine degradation
axn00350  Tyrosine metabolism
axn00470  D-Amino acid metabolism
axn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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