KEGG   PATHWAY: azd00020
Entry
azd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Azoarcus sp. DN11
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
azd00020  Citrate cycle (TCA cycle)
azd00020

Module
azd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:azd00020]
azd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:azd00020]
azd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:azd00020]
azd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:azd00020]
Other DBs
GO: 0006099
Organism
Azoarcus sp. DN11 [GN:azd]
Gene
CDA09_13195  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CDA09_15875  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
CDA09_15870  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CDA09_03485  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CDA09_03490  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CDA09_13190  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CDA09_13185  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CDA09_06900  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CDA09_13180  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CDA09_15545  2-oxoglutarate synthase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CDA09_08650  ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CDA09_21760  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CDA09_15540  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CDA09_08655  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CDA09_21755  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CDA09_04375  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CDA09_04370  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CDA09_20195  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
CDA09_13210  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CDA09_12985  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CDA09_13205  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CDA09_12975  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CDA09_13220  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CDA09_12980  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CDA09_13215  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CDA09_08925  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CDA09_19930  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CDA09_13230  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CDA09_03225  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CDA09_06910  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CDA09_06905  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
CDA09_18560  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
azd00010  Glycolysis / Gluconeogenesis
azd00053  Ascorbate and aldarate metabolism
azd00061  Fatty acid biosynthesis
azd00071  Fatty acid degradation
azd00190  Oxidative phosphorylation
azd00220  Arginine biosynthesis
azd00250  Alanine, aspartate and glutamate metabolism
azd00280  Valine, leucine and isoleucine degradation
azd00350  Tyrosine metabolism
azd00470  D-Amino acid metabolism
azd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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