KEGG   PATHWAY: azi00020
Entry
azi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Azoarcus sp. CIB
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
azi00020  Citrate cycle (TCA cycle)
azi00020

Module
azi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:azi00020]
azi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:azi00020]
azi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:azi00020]
azi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:azi00020]
azi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:azi00020]
Other DBs
GO: 0006099
Organism
Azoarcus sp. CIB [GN:azi]
Gene
AzCIB_1865  citrate synthase [KO:K01647] [EC:2.3.3.1]
AzCIB_2920  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AzCIB_2919  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AzCIB_3272  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
AzCIB_3273  Isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
AzCIB_1864  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AzCIB_1863  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
AzCIB_1862  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AzCIB_0982  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AzCIB_2286  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AzCIB_1255  2-oxoglutarate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AzCIB_2856  2-oxoglutarate ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AzCIB_4480  putative 2-oxoglutarate:ferredoxin oxidoreductase alfa subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
AzCIB_1256  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AzCIB_2855  2-oxoglutarate ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AzCIB_4479  putative 2-oxoglutarate:ferredoxin oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
AzCIB_0673  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
AzCIB_0672  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AzCIB_4145  coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
AzCIB_1868  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AzCIB_1867  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AzCIB_2410  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AzCIB_1870  succinate dehydrogenase [KO:K00241]
AzCIB_2412  putative succinate dehydrogenase cytochrome B subunit [KO:K00241]
AzCIB_1869  succinate dehydrogenase membrane anchor subunit [KO:K00242]
AzCIB_2411  succinate dehydrogenase,hydrophobic membrane anchor protein [KO:K00242]
AzCIB_0446  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
AzCIB_0447  fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
AzCIB_0448  fumarate reductase, subunit C [KO:K00246]
AzCIB_0449  fumarate reductase subunit D [KO:K00247]
AzCIB_1324  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AzCIB_4094  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AzCIB_1872  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AzCIB_1176  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
AzCIB_0540  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
AzCIB_0984  pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
AzCIB_1015  pyruvate dehydrogenase E1 component (alpha subunit) oxidoreductase protein [KO:K00161] [EC:1.2.4.1]
AzCIB_1016  pyruvate dehydrogenase E1 component (beta subunit) oxidoreductase protein [KO:K00162] [EC:1.2.4.1]
AzCIB_0983  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
AzCIB_1017  pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
AzCIB_3857  pyruvate dehydrogenase E2 component [KO:K00627] [EC:2.3.1.12]
AzCIB_2887  pyruvate oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
azi00010  Glycolysis / Gluconeogenesis
azi00053  Ascorbate and aldarate metabolism
azi00061  Fatty acid biosynthesis
azi00071  Fatty acid degradation
azi00190  Oxidative phosphorylation
azi00220  Arginine biosynthesis
azi00250  Alanine, aspartate and glutamate metabolism
azi00280  Valine, leucine and isoleucine degradation
azi00350  Tyrosine metabolism
azi00470  D-Amino acid metabolism
azi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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