KEGG   PATHWAY: azm00020
Entry
azm00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Azospirillum ramasamyi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
azm00020  Citrate cycle (TCA cycle)
azm00020

Module
azm_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:azm00020]
azm_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:azm00020]
azm_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:azm00020]
azm_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:azm00020]
azm_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:azm00020]
Other DBs
GO: 0006099
Organism
Azospirillum ramasamyi [GN:azm]
Gene
DM194_04020  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DM194_25235  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DM194_09450  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DM194_17460  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
DM194_06565  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DM194_06600  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DM194_00570  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DM194_21405  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DM194_00565  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
DM194_09810  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DM194_04700  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DM194_16045  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DM194_00575  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DM194_16040  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DM194_00580  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DM194_22700  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
DM194_10795  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DM194_10790  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DM194_10805  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DM194_10800  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
DM194_14465  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
DM194_05540  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DM194_00585  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DM194_11405  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
DM194_14450  transketolase [KO:K00163] [EC:1.2.4.1]
DM194_04720  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DM194_04715  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
DM194_02695  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
DM194_04710  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
DM194_17500  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
azm00010  Glycolysis / Gluconeogenesis
azm00053  Ascorbate and aldarate metabolism
azm00061  Fatty acid biosynthesis
azm00071  Fatty acid degradation
azm00190  Oxidative phosphorylation
azm00220  Arginine biosynthesis
azm00250  Alanine, aspartate and glutamate metabolism
azm00280  Valine, leucine and isoleucine degradation
azm00350  Tyrosine metabolism
azm00470  D-Amino acid metabolism
azm00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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