KEGG   PATHWAY: azr00020
Entry
azr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Azoarcus sp. DD4
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
azr00020  Citrate cycle (TCA cycle)
azr00020

Module
azr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:azr00020]
azr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:azr00020]
azr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:azr00020]
azr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:azr00020]
azr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:azr00020]
Other DBs
GO: 0006099
Organism
Azoarcus sp. DD4 [GN:azr]
Gene
CJ010_09530  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CJ010_09420  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
CJ010_09425  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CJ010_06895  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CJ010_06900  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CJ010_09535  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CJ010_09540  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CJ010_08575  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CJ010_09545  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CJ010_20370  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CJ010_20375  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CJ010_20230  propionyl-CoA--succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
CJ010_09515  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CJ010_09520  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CJ010_09505  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
CJ010_09510  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CJ010_15130  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CJ010_04370  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
CJ010_09495  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CJ010_05000  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CJ010_04215  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CJ010_08585  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CJ010_08215  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CJ010_08220  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
CJ010_04210  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
CJ010_08580  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
CJ010_08225  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
azr00010  Glycolysis / Gluconeogenesis
azr00053  Ascorbate and aldarate metabolism
azr00061  Fatty acid biosynthesis
azr00071  Fatty acid degradation
azr00190  Oxidative phosphorylation
azr00220  Arginine biosynthesis
azr00250  Alanine, aspartate and glutamate metabolism
azr00280  Valine, leucine and isoleucine degradation
azr00350  Tyrosine metabolism
azr00470  D-Amino acid metabolism
azr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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