KEGG   PATHWAY: azs00020
Entry
azs00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Azospirillum sp. TSH100
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
azs00020  Citrate cycle (TCA cycle)
azs00020

Module
azs_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:azs00020]
azs_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:azs00020]
azs_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:azs00020]
azs_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:azs00020]
azs_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:azs00020]
Other DBs
GO: 0006099
Organism
Azospirillum sp. TSH100 [GN:azs]
Gene
E6C72_11230  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
E6C72_29760  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
E6C72_02185  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
E6C72_19895  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
E6C72_11610  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
E6C72_11645  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
E6C72_05795  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
E6C72_05790  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
E6C72_10760  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E6C72_02520  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E6C72_05800  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
E6C72_16665  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
E6C72_05805  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
E6C72_16660  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
E6C72_27225  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
E6C72_03705  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
E6C72_03700  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
E6C72_03715  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
E6C72_03710  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
E6C72_17415  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
E6C72_11930  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
E6C72_05810  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E6C72_04725  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
E6C72_17445  transketolase [KO:K00163] [EC:1.2.4.1]
E6C72_10780  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
E6C72_10775  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
E6C72_08010  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
E6C72_10770  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
E6C72_19840  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
azs00010  Glycolysis / Gluconeogenesis
azs00053  Ascorbate and aldarate metabolism
azs00061  Fatty acid biosynthesis
azs00071  Fatty acid degradation
azs00190  Oxidative phosphorylation
azs00220  Arginine biosynthesis
azs00250  Alanine, aspartate and glutamate metabolism
azs00280  Valine, leucine and isoleucine degradation
azs00350  Tyrosine metabolism
azs00470  D-Amino acid metabolism
azs00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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