KEGG   PATHWAY: baen00020
Entry
baen00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia aenigmatica
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
baen00020  Citrate cycle (TCA cycle)
baen00020

Module
baen_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:baen00020]
baen_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:baen00020]
baen_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:baen00020]
baen_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:baen00020]
baen_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:baen00020]
Other DBs
GO: 0006099
Organism
Burkholderia aenigmatica [GN:baen]
Gene
L3V59_34660  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
L3V59_23300  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
L3V59_34605  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
L3V59_23415  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
L3V59_14570  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
L3V59_14575  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
L3V59_08195  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
L3V59_08200  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
L3V59_06680  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
L3V59_08205  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
L3V59_12220  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
L3V59_15175  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
L3V59_15180  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
L3V59_19260  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
L3V59_34645  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
L3V59_34650  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
L3V59_43945  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
L3V59_34635  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
L3V59_34640  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
L3V59_12620  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
L3V59_05420  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
L3V59_34625  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
L3V59_30450  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
L3V59_21520  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
L3V59_12230  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
L3V59_23945  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
L3V59_10420  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
L3V59_12225  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
baen00010  Glycolysis / Gluconeogenesis
baen00053  Ascorbate and aldarate metabolism
baen00061  Fatty acid biosynthesis
baen00071  Fatty acid degradation
baen00190  Oxidative phosphorylation
baen00220  Arginine biosynthesis
baen00250  Alanine, aspartate and glutamate metabolism
baen00280  Valine, leucine and isoleucine degradation
baen00350  Tyrosine metabolism
baen00470  D-Amino acid metabolism
baen00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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