KEGG   PATHWAY: bany04144
Entry
bany04144                   Pathway                                
Name
Endocytosis - Bicyclus anynana (squinting bush brown)
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
Pathway map
bany04144  Endocytosis
bany04144

Other DBs
GO: 0006897
Organism
Bicyclus anynana (squinting bush brown) [GN:bany]
Gene
112044212  ADP-ribosylation factor 6 [KO:K07941]
112045960  phosphatidylinositol 4-phosphate 5-kinase type-1 gamma isoform X1 [KO:K00889] [EC:2.7.1.68]
112044320  phospholipase D2 isoform X1 [KO:K01115] [EC:3.1.4.4]
112053273  dynamin isoform X1 [KO:K01528] [EC:3.6.5.5]
112051546  clathrin heavy chain [KO:K04646]
112053797  AP-2 complex subunit alpha [KO:K11824]
112045025  AP-2 complex subunit mu [KO:K11826]
112050531  AP-2 complex subunit sigma [KO:K11827]
112048659  TGF-beta receptor type-1 isoform X1 [KO:K04674] [EC:2.7.11.30]
112045951  mothers against decapentaplegic homolog 3 isoform X1 [KO:K23605]
112045731  epidermal growth factor receptor isoform X1 [KO:K04361] [EC:2.7.10.1]
112046739  tyrosine-protein kinase receptor torso [KO:K05093] [EC:2.7.10.1]
112049048  putative molluscan insulin-related peptide(s) receptor isoform X1 [KO:K05087] [EC:2.7.10.1]
112051053  E3 ubiquitin-protein ligase CBL-B-B isoform X1 [KO:K04707] [EC:2.3.2.27]
112046777  endophilin-A isoform X1 [KO:K11247]
112047691  amphiphysin isoform X1 [KO:K12562]
112051449  epsin-1 [KO:K12471]
112044839  epidermal growth factor receptor substrate 15-like 1 [KO:K12472]
112047654  E3 ubiquitin-protein ligase Nedd-4 isoform X1 [KO:K10591] [EC:2.3.2.26]
112044490  E3 ubiquitin-protein ligase Mdm2 isoform X1 [KO:K06643] [EC:2.3.2.27]
112046594  TNF receptor-associated factor 6 [KO:K03175] [EC:2.3.2.27]
112048578  E3 ubiquitin-protein ligase NRDP1 isoform X1 [KO:K11981] [EC:2.3.2.27]
112047782  E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
112058559  E3 ubiquitin-protein ligase Su(dx) [KO:K05633] [EC:2.3.2.26]
112045588  low density lipoprotein receptor adapter protein 1-like [KO:K12474]
112058009  protein disabled isoform X3 [KO:K12475]
112051822  G protein-coupled receptor kinase 1 [KO:K00910] [EC:2.7.11.15]
112051026  beta-arrestin-1 isoform X1 [KO:K04439]
112053415  arrestin homolog [KO:K04439]
112058223  actin nucleation-promoting factor WASL isoform X1 [KO:K23612]
112058088  actin-related protein 2 [KO:K17260]
112054360  actin-related protein 3-like [KO:K18584]
112054361  actin-related protein 3 [KO:K18584]
112043428  actin-related protein 2/3 complex subunit 1A-B [KO:K05757]
112052297  actin-related protein 2/3 complex subunit 2 [KO:K05758]
112050083  actin-related protein 2/3 complex subunit 3 [KO:K05756]
112051550  actin-related protein 2/3 complex subunit 4 [KO:K05755]
112058580  actin-related protein 2/3 complex subunit 5-B [KO:K05754]
112047994  heat shock protein 68 [KO:K03283]
112050631  heat shock protein 68-like [KO:K03283]
112051390  heat shock protein 68 [KO:K03283]
112051623  heat shock protein 68-like [KO:K03283]
112045034  heat shock protein 68-like [KO:K03283]
112052645  heat shock 70 kDa protein cognate 4 [KO:K03283]
112045715  heat shock protein 68-like [KO:K03283]
112053842  heat shock protein 68-like isoform X1 [KO:K03283]
128198722  heat shock protein 68-like [KO:K03283]
112044776  WASH complex subunit 4 [KO:K18465]
112043157  WASH complex subunit 5 [KO:K18464]
112047741  WASH complex subunit 2 [KO:K18462]
112049539  WASH complex subunit 1 [KO:K18461]
112048814  WASH complex subunit 3 [KO:K18463]
112044834  F-actin-capping protein subunit alpha [KO:K10364]
112044605  F-actin-capping protein subunit beta [KO:K10365]
112048404  vacuolar protein sorting-associated protein 29 [KO:K18467]
112051196  vacuolar protein sorting-associated protein 26B-like [KO:K18466]
112056495  vacuolar protein sorting-associated protein 35 isoform X1 [KO:K18468]
112049399  sorting nexin-12 [KO:K17918]
112057717  ubiquitin carboxyl-terminal hydrolase 8 isoform X4 [KO:K11839] [EC:3.4.19.12]
112054995  STAM-binding protein-like A [KO:K11866] [EC:3.4.19.12]
112051773  ras-related protein Rab-7a [KO:K07897]
112049063  hepatocyte growth factor-regulated tyrosine kinase substrate isoform X1 [KO:K12182]
112057018  signal transducing adapter molecule 1 [KO:K04705]
112046753  tumor susceptibility gene 101 protein [KO:K12183]
112054832  uncharacterized protein LOC112054832 isoform X1 [KO:K12186]
112058406  vacuolar protein sorting-associated protein 28 homolog [KO:K12184]
112047603  vacuolar protein sorting-associated protein 37A [KO:K12185]
112048400  vacuolar protein sorting-associated protein 37B [KO:K12185]
112047757  vacuolar-sorting protein SNF8 [KO:K12188]
112043200  vacuolar protein-sorting-associated protein 36 [KO:K12190]
112050868  vacuolar protein-sorting-associated protein 25 isoform X2 [KO:K12189]
112050501  charged multivesicular body protein 6-A [KO:K12195]
112052548  charged multivesicular body protein 4c [KO:K12194]
112045394  charged multivesicular body protein 3 [KO:K12193]
112053330  charged multivesicular body protein 2a [KO:K12191]
112043570  charged multivesicular body protein 2b [KO:K12192]
112044891  charged multivesicular body protein 7 [KO:K15053]
112051598  vacuolar protein sorting-associated protein 4 [KO:K12196]
112048576  vacuolar protein sorting-associated protein VTA1 homolog [KO:K12199]
112047402  charged multivesicular body protein 1b [KO:K12197]
112048520  charged multivesicular body protein 5 [KO:K12198]
112047286  IST1 homolog isoform X1 [KO:K19476]
112050351  programmed cell death 6-interacting protein [KO:K12200]
112045163  maspardin [KO:K19367]
112052745  sorting nexin-2 [KO:K17917]
112051961  sorting nexin-32 [KO:K17920]
112051516  tyrosine-protein kinase Src64B isoform X1 [KO:K05704] [EC:2.7.10.2]
112057279  ras-like GTP-binding protein Rho1 isoform X1 [KO:K04513]
112055570  caveolin-3-like [KO:K12959]
112049326  ras-related protein Rab-5B isoform X1 [KO:K07888]
112046466  rab GTPase-binding effector protein 1 isoform X1 [KO:K12480]
112043768  rabenosyn-5 [KO:K12481]
112043624  RUN and FYVE domain-containing protein 2 isoform X1 [KO:K12482]
112043844  EH domain-containing protein 3 isoform X1 [KO:K12483]
112045902  vacuolar protein sorting-associated protein 45 [KO:K12479]
112043481  sorting nexin-4 isoform X1 [KO:K17919]
112043411  ras-related protein Rab-10 [KO:K07903]
112044361  ras-related protein Rab-8A [KO:K07901]
112051563  ras-related protein Rab-35 [KO:K07876]
112046977  ras-related protein Rab-11A [KO:K07904]
112054172  rab11 family-interacting protein 2 [KO:K12484]
112050103  kinesin heavy chain [KO:K10396]
112054155  rab11 family-interacting protein 4B isoform X1 [KO:K12485]
112053199  partitioning defective 3 homolog [KO:K04237]
112045283  partitioning defective 6 homolog beta [KO:K06093]
112044621  atypical protein kinase C isoform X1 [KO:K06069] [EC:2.7.11.13]
112048222  cdc42 homolog [KO:K04393]
112049092  stromal membrane-associated protein 1 [KO:K12486]
112054256  ARF GTPase-activating protein Git isoform X1 [KO:K12487]
112052505  arfGAP with SH3 domain, ANK repeat and PH domain-containing protein isoform X1 [KO:K12488]
112043556  arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 [KO:K12489]
112050066  centaurin-gamma-1A isoform X1 [KO:K12491]
112045865  ADP-ribosylation factor GTPase-activating protein 1 [KO:K12492]
112053332  ADP-ribosylation factor GTPase-activating protein 2 [KO:K12493]
112048131  PH and SEC7 domain-containing protein [KO:K12494]
112046543  IQ motif and SEC7 domain-containing protein 2 isoform X1 [KO:K12495]
112049067  cytohesin-1 isoform X1 [KO:K18441]
112043427  brefeldin A-inhibited guanine nucleotide-exchange protein 1 [KO:K18442]
112049237  Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 isoform X1 [KO:K18443]
112052176  ADP-ribosylation factor 1 [KO:K07937]
112049005  ADP-ribosylation factor 2 [KO:K07939]
Compound
C00035  GDP
C00044  GTP
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637  1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981  Phosphatidylinositol-3,4,5-trisphosphate
C11556  1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
  Authors
Acconcia F, Sigismund S, Polo S
  Title
Ubiquitin in trafficking: the network at work.
  Journal
Exp Cell Res 315:1610-8 (2009)
DOI:10.1016/j.yexcr.2008.10.014
Reference
  Authors
Donaldson JG, Porat-Shliom N, Cohen LA
  Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
  Journal
Cell Signal 21:1-6 (2009)
DOI:10.1016/j.cellsig.2008.06.020
Reference
  Authors
Sorkin A
  Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
  Journal
Curr Opin Cell Biol 16:392-9 (2004)
DOI:10.1016/j.ceb.2004.06.001
Reference
  Authors
Raiborg C, Stenmark H
  Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
  Journal
Nature 458:445-52 (2009)
DOI:10.1038/nature07961
Reference
  Authors
Scita G, Di Fiore PP
  Title
The endocytic matrix.
  Journal
Nature 463:464-73 (2010)
DOI:10.1038/nature08910
Reference
  Authors
Le Roy C, Wrana JL
  Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
  Journal
Nat Rev Mol Cell Biol 6:112-26 (2005)
DOI:10.1038/nrm1571
Reference
  Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
  Title
The early endosome: a busy sorting station for proteins at the crossroads.
  Journal
Histol Histopathol 25:99-112 (2010)
DOI:10.14670/HH-25.99
Reference
  Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
  Title
Viral entry, lipid rafts and caveosomes.
  Journal
Ann Med 37:394-403 (2005)
DOI:10.1080/07853890510011976
Reference
  Authors
Grant BD, Donaldson JG
  Title
Pathways and mechanisms of endocytic recycling.
  Journal
Nat Rev Mol Cell Biol 10:597-608 (2009)
DOI:10.1038/nrm2755
Reference
  Authors
Cullen PJ, Korswagen HC
  Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
  Journal
Nat Cell Biol 14:29-37 (2012)
DOI:10.1038/ncb2374
Related
pathway
bany04070  Phosphatidylinositol signaling system
bany04130  SNARE interactions in vesicular transport
bany04142  Lysosome
bany04350  TGF-beta signaling pathway
KO pathway
ko04144   
LinkDB

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