KEGG   PATHWAY: bao00020
Entry
bao00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus amyloliquefaciens DSM 7
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bao00020  Citrate cycle (TCA cycle)
bao00020

Module
bao_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bao00020]
bao_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bao00020]
bao_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bao00020]
bao_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bao00020]
bao_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bao00020]
Other DBs
GO: 0006099
Organism
Bacillus amyloliquefaciens DSM 7 [GN:bao]
Gene
BAMF_1040  citA; citrate synthase I [KO:K01647] [EC:2.3.3.1]
BAMF_2311  prpC3; 2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
BAMF_2717  citZ; citrate synthase II [KO:K01647] [EC:2.3.3.1]
BAMF_1886  citB; CitB [KO:K01681] [EC:4.2.1.3]
BAMF_2716  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BAMF_2009  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BAMF_2008  odhB; 2-oxoglutarate dehydrogenase complex (dihydrolipoamide transsuccinylase, E2 subunit) [KO:K00658] [EC:2.3.1.61]
BAMF_0784  acoL; acetoin dehydrogenase E3 component (dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
BAMF_1536  pdhD; dihydrolipoamide dehydrogenase E3 subunit of both pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase complexes [KO:K00382] [EC:1.8.1.4]
BAMF_2303  lpdV; branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
BAMF_1681  sucD; succinyl-CoA synthetase (alpha subunit) [KO:K01902] [EC:6.2.1.5]
BAMF_1680  sucC; succinyl-CoA synthetase (beta subunit) [KO:K01903] [EC:6.2.1.5]
BAMF_2650  sdhA; succinate dehydrogenase (flavoprotein subunit) [KO:K00239] [EC:1.3.5.1]
BAMF_2649  sdhB; succinate dehydrogenase (iron-sulfur protein) [KO:K00240] [EC:1.3.5.1]
BAMF_2651  sdhC; succinate dehydrogenase (cytochrome b558 subunit) [KO:K00241]
BAMF_3144  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BAMF_2715  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BAMF_1560  pycA; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BAMF_2839  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BAMF_1533  pdhA; pyruvate dehydrogenase (E1 alpha subunit) [KO:K00161] [EC:1.2.4.1]
BAMF_1534  pdhB; pyruvate dehydrogenase (E1 beta subunit) [KO:K00162] [EC:1.2.4.1]
BAMF_0783  acoC; acetoin dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
BAMF_1535  pdhC; pyruvate dehydrogenase (dihydrolipoamide acetyltransferase E2 subunit) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bao00010  Glycolysis / Gluconeogenesis
bao00053  Ascorbate and aldarate metabolism
bao00061  Fatty acid biosynthesis
bao00071  Fatty acid degradation
bao00190  Oxidative phosphorylation
bao00220  Arginine biosynthesis
bao00250  Alanine, aspartate and glutamate metabolism
bao00280  Valine, leucine and isoleucine degradation
bao00350  Tyrosine metabolism
bao00470  D-Amino acid metabolism
bao00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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