KEGG   PATHWAY: bao00240
Entry
bao00240                    Pathway                                
Name
Pyrimidine metabolism - Bacillus amyloliquefaciens DSM 7
Class
Metabolism; Nucleotide metabolism
Pathway map
bao00240  Pyrimidine metabolism
bao00240

Module
bao_M00052  Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:bao00240]
bao_M00053  Deoxyribonucleotide biosynthesis, ADP/GDP/CDP/UDP => dATP/dGTP/dCTP/dUTP [PATH:bao00240]
bao_M00938  Pyrimidine deoxyribonucleotide biosynthesis, UDP => dTTP [PATH:bao00240]
Other DBs
GO: 0006220 0006213
Organism
Bacillus amyloliquefaciens DSM 7 [GN:bao]
Gene
BAMF_1197  carB; arginine-specific carbamoyl-phosphate synthetase (large subunit) [KO:K01955] [EC:6.3.5.5]
BAMF_1623  pyrAB; pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) [KO:K01955] [EC:6.3.5.5]
BAMF_1196  carA; arginine-specific carbamoyl-phosphate synthetase (small subunit) [KO:K01956] [EC:6.3.5.5]
BAMF_1622  pyrAA; pyrimidine-specific carbamoyl-phosphate synthetase (small subunit, glutaminase subunit) [KO:K01956] [EC:6.3.5.5]
BAMF_1620  pyrB; aspartate carbamoyltransferase [KO:K00609] [EC:2.1.3.2]
BAMF_1621  pyrC; dihydroorotase [KO:K01465] [EC:3.5.2.3]
BAMF_1625  pyrD; dihydroorotate dehydrogenase (catalytic subunit) [KO:K17828] [EC:1.3.1.14]
BAMF_1624  pyrK; dihydroorotate dehydrogenase (electron transfer subunit) [KO:K02823]
BAMF_1627  pyrE; orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
BAMF_1626  pyrF; orotidine 5'-phosphate decarboxylase [KO:K01591] [EC:4.1.1.23]
BAMF_1723  pyrH; uridylate kinase [KO:K09903] [EC:2.7.4.22]
BAMF_2174  ndk; nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
BAMF_2611  maf; putative septum formation DNA-binding protein [KO:K06287] [EC:3.6.1.-]
BAMF_3552  pyrG; CTP synthetase [KO:K01937] [EC:6.3.4.2]
BAMF_2190  cmk; cytidylate kinase [KO:K00945] [EC:2.7.4.25]
BAMF_2541  udk; uridine kinase [KO:K00876] [EC:2.7.1.48]
BAMF_1015  yhcR; non specific extracellular endonuclease cleaving RNA and DNA [KO:K01081] [EC:3.1.3.5]
BAMF_3039  yunD; putative nuclease/nucleotidase/phosphoesterase [KO:K01081] [EC:3.1.3.5]
BAMF_0752  yfkN; extracellular 2',3' cyclic nucleotide phosphodiesterase, 2' (or 3') nucleotidase and 5' nucleotidase [KO:K08693] [EC:3.1.4.16 3.1.3.6 3.1.3.5]
BAMF_3526  upp; uracil phosphoribosyltransferase [KO:K00761] [EC:2.4.2.9]
BAMF_1618  pyrR; transcriptional attenuator and uracil phosphoribosyltransferase activity [KO:K02825] [EC:2.4.2.9]
BAMF_1769  ymdB; conserved hypothetical protein [KO:K09769] [EC:3.1.4.16]
BAMF_3763  pdp; pyrimidine-nucleoside phosphorylase [KO:K00756] [EC:2.4.2.2]
BAMF_2427  cdd; cytidine/deoxycytidine deaminase [KO:K01489] [EC:3.5.4.5]
BAMF_0912  nrdE1; ribonucleoside-diphosphate reductase alpha chain [KO:K00525] [EC:1.17.4.1]
BAMF_0914  nrdE2; ribonucleoside-diphosphate reductase alpha chain [KO:K00525] [EC:1.17.4.1]
BAMF_1807  nrdE; ribonucleoside-diphosphate reductase (major subunit) [KO:K00525] [EC:1.17.4.1]
BAMF_0915  nrdF1; ribonucleoside-diphosphate reductase, beta subunit [KO:K00526] [EC:1.17.4.1]
BAMF_1808  nrdF3; ribonucleoside-diphosphate reductase (minor subunit) [KO:K00526] [EC:1.17.4.1]
BAMF_0015  dck; deoxyadenosine/deoxycytidine kinase [KO:K15519] [EC:2.7.1.76 2.7.1.74]
BAMF_2456  comEB; putative enzyme associated to DNA transport (competence) [KO:K01493] [EC:3.5.4.12]
BAMF_0028  tmk; thymidylate kinase [KO:K00943] [EC:2.7.4.9]
BAMF_1864  yncF; putative deoxyuridine 5'-triphosphate pyrophosphatase [KO:K01520] [EC:3.6.1.23]
BAMF_0916  dut; deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
BAMF_3543  tdk; thymidine kinase [KO:K00857] [EC:2.7.1.21]
BAMF_2083  thyB; thymidylate synthase B [KO:K00560] [EC:2.1.1.45]
BAMF_0917  thyX; thy1 protein [KO:K03465] [EC:2.1.1.148]
Compound
C00015  UDP
C00039  DNA
C00046  RNA
C00055  CMP
C00063  CTP
C00064  L-Glutamine
C00075  UTP
C00086  Urea
C00099  beta-Alanine
C00105  UMP
C00106  Uracil
C00112  CDP
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00169  Carbamoyl phosphate
C00178  Thymine
C00214  Thymidine
C00222  3-Oxopropanoate
C00239  dCMP
C00295  Orotate
C00299  Uridine
C00337  (S)-Dihydroorotate
C00363  dTDP
C00364  dTMP
C00365  dUMP
C00380  Cytosine
C00383  Malonate
C00429  5,6-Dihydrouracil
C00438  N-Carbamoyl-L-aspartate
C00458  dCTP
C00459  dTTP
C00460  dUTP
C00475  Cytidine
C00526  Deoxyuridine
C00672  2-Deoxy-D-ribose 1-phosphate
C00705  dCDP
C00813  Barbiturate
C00881  Deoxycytidine
C00941  3',5'-Cyclic CMP
C01013  3-Hydroxypropanoate
C01103  Orotidine 5'-phosphate
C01168  Pseudouridine 5'-phosphate
C01205  (R)-3-Amino-2-methylpropanoate
C01346  dUDP
C01368  3'-UMP
C01563  Carbamate
C02067  Pseudouridine
C02170  Methylmalonate
C02354  2',3'-Cyclic CMP
C02355  2',3'-Cyclic UMP
C02376  5-Methylcytosine
C02642  3-Ureidopropionate
C03997  5-Hydroxymethyldeoxycytidylate
C05281  5-Methylbarbiturate
C05822  3'-CMP
C06198  P1,P4-Bis(5'-uridyl) tetraphosphate
C11038  2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039  2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607  3-Oxo-3-ureidopropanoate
C20231  (Z)-3-Ureidoacrylate peracid
C20249  (Z)-3-Peroxyaminoacrylate
C20253  Aminoacrylate
C20254  Ureidoacrylate
C20846  3-Oxo-3-ureidoisobutyrate
C21028  (R)-5,6-Dihydrothymine
C21029  (R)-3-Ureidoisobutyrate
C22509  3',5'-Cyclic UMP
Related
pathway
bao00030  Pentose phosphate pathway
bao00220  Arginine biosynthesis
bao00250  Alanine, aspartate and glutamate metabolism
bao00280  Valine, leucine and isoleucine degradation
bao00410  beta-Alanine metabolism
KO pathway
ko00240   
LinkDB

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