KEGG   PATHWAY: bbac00020
Entry
bbac00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bdellovibrio bacteriovorus 109J
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bbac00020  Citrate cycle (TCA cycle)
bbac00020

Module
bbac_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bbac00020]
bbac_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bbac00020]
bbac_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bbac00020]
bbac_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bbac00020]
Other DBs
GO: 0006099
Organism
Bdellovibrio bacteriovorus 109J [GN:bbac]
Gene
EP01_17150  citrate synthase [KO:K01647] [EC:2.3.3.1]
EP01_01185  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
EP01_10040  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
EP01_11080  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EP01_16250  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
EP01_09800  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
EP01_09805  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
EP01_09810  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
EP01_18135  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
EP01_11555  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
EP01_11550  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
EP01_04310  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
EP01_12155  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
EP01_12160  fumarate reductase [KO:K00240] [EC:1.3.5.1]
EP01_12150  cytochrome B subunit [KO:K00241]
EP01_07045  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EP01_16500  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EP01_14760  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EP01_13905  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
EP01_18140  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bbac00010  Glycolysis / Gluconeogenesis
bbac00061  Fatty acid biosynthesis
bbac00071  Fatty acid degradation
bbac00190  Oxidative phosphorylation
bbac00220  Arginine biosynthesis
bbac00250  Alanine, aspartate and glutamate metabolism
bbac00280  Valine, leucine and isoleucine degradation
bbac00350  Tyrosine metabolism
bbac00470  D-Amino acid metabolism
bbac00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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