KEGG   PATHWAY: bbag00020
Entry
bbag00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderiales bacterium GJ-E10
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bbag00020  Citrate cycle (TCA cycle)
bbag00020

Module
bbag_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bbag00020]
bbag_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bbag00020]
bbag_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bbag00020]
bbag_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bbag00020]
Other DBs
GO: 0006099
Organism
Burkholderiales bacterium GJ-E10 [GN:bbag]
Gene
E1O_15710  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
E1O_15780  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
E1O_14630  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
E1O_15700  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
E1O_15690  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
E1O_15850  FAD-dependent pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
E1O_16250  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
E1O_15680  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
E1O_02670  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
E1O_02660  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
E1O_15740  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
E1O_15730  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
E1O_15760  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
E1O_15750  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
E1O_20500  tartrate/fumarate family Fe-S type hydro-lyase [KO:K01676] [EC:4.2.1.2]
E1O_04030  fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
E1O_15770  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E1O_16280  pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
E1O_16270  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
E1O_20430  pyruvate:ferredoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bbag00010  Glycolysis / Gluconeogenesis
bbag00053  Ascorbate and aldarate metabolism
bbag00061  Fatty acid biosynthesis
bbag00071  Fatty acid degradation
bbag00190  Oxidative phosphorylation
bbag00220  Arginine biosynthesis
bbag00250  Alanine, aspartate and glutamate metabolism
bbag00280  Valine, leucine and isoleucine degradation
bbag00350  Tyrosine metabolism
bbag00470  D-Amino acid metabolism
bbag00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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