KEGG   PATHWAY: bbet00020
Entry
bbet00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bradyrhizobium betae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bbet00020  Citrate cycle (TCA cycle)
bbet00020

Module
bbet_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bbet00020]
bbet_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bbet00020]
bbet_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bbet00020]
Other DBs
GO: 0006099
Organism
Bradyrhizobium betae [GN:bbet]
Gene
F8237_31515  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
F8237_17370  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
F8237_17375  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
F8237_16260  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
F8237_16330  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
F8237_16335  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
F8237_31760  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F8237_16345  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F8237_23015  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
F8237_23010  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
F8237_16325  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
F8237_16315  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
F8237_16755  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
F8237_16020  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
F8237_16015  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
F8237_02520  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
F8237_16030  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
F8237_02525  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
F8237_16025  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
F8237_02530  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
F8237_27310  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
F8237_24180  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
F8237_16310  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
F8237_18740  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
F8237_05910  transketolase [KO:K00163] [EC:1.2.4.1]
F8237_31735  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
F8237_31740  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
F8237_31755  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bbet00010  Glycolysis / Gluconeogenesis
bbet00053  Ascorbate and aldarate metabolism
bbet00061  Fatty acid biosynthesis
bbet00071  Fatty acid degradation
bbet00190  Oxidative phosphorylation
bbet00220  Arginine biosynthesis
bbet00250  Alanine, aspartate and glutamate metabolism
bbet00280  Valine, leucine and isoleucine degradation
bbet00350  Tyrosine metabolism
bbet00470  D-Amino acid metabolism
bbet00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system