KEGG   PATHWAY: bbev00020
Entry
bbev00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Salisediminibacterium beveridgei
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bbev00020  Citrate cycle (TCA cycle)
bbev00020

Module
bbev_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bbev00020]
bbev_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bbev00020]
bbev_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bbev00020]
bbev_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bbev00020]
Other DBs
GO: 0006099
Organism
Salisediminibacterium beveridgei [GN:bbev]
Gene
BBEV_0890  citZ; Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
BBEV_1709  citB; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BBEV_0445  leuC-1; 3-isopropylmalate dehydratase large subunit [KO:K01681] [EC:4.2.1.3]
BBEV_0891  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
BBEV_1528  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BBEV_1529  odhB; Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BBEV_1320  bfmBC; Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase [KO:K00382] [EC:1.8.1.4]
BBEV_1960  pdhD; Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
BBEV_1414  2-oxoacid:ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BBEV_1755  korA-1; 2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BBEV_2425  korA-2; 2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BBEV_1415  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BBEV_1754  korB-1; 2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BBEV_2424  korB-2; 2-oxoglutarate oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BBEV_1416  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
BBEV_1413  2-oxoacid:ferredoxin oxidoreductase subunit delta [KO:K00176] [EC:1.2.7.3]
BBEV_1839  sucD; Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
BBEV_1840  sucC; Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
BBEV_0945  sdhA-1; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BBEV_2721  sdhA-2; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BBEV_0946  sdhB-1; Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BBEV_2203  frdB; Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BBEV_2720  sdhB-2; Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BBEV_0944  sdhC-1; Succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
BBEV_2202  hdrB2; heterodisulfide reductase subunit B [KO:K00241]
BBEV_2722  sdhC-2; Succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
BBEV_2206  ttdA; Fumarate / L(+)-tartrate hydratase, alpha subunit [KO:K01677] [EC:4.2.1.2]
BBEV_2205  fumA; Fumarate / L(+)-tartrate hydratase, beta subunit [KO:K01678] [EC:4.2.1.2]
BBEV_1520  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BBEV_0892  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BBEV_0048  mqo; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BBEV_0728  pckA; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BBEV_1963  pdhA; Pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
BBEV_1962  pdhB; Pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
BBEV_2736  acoC; Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
BBEV_1961  pdhC; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
BBEV_1685  porA; Pyruvate:ferredoxin oxidoreductase, alpha subunit / Pyruvate:ferredoxin oxidoreductase, beta subunit [KO:K00169] [EC:1.2.7.1]
BBEV_1684  porC; Pyruvate:ferredoxin oxidoreductase, gamma, delta subunits [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bbev00010  Glycolysis / Gluconeogenesis
bbev00053  Ascorbate and aldarate metabolism
bbev00061  Fatty acid biosynthesis
bbev00071  Fatty acid degradation
bbev00190  Oxidative phosphorylation
bbev00220  Arginine biosynthesis
bbev00250  Alanine, aspartate and glutamate metabolism
bbev00280  Valine, leucine and isoleucine degradation
bbev00350  Tyrosine metabolism
bbev00470  D-Amino acid metabolism
bbev00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system