KEGG   PATHWAY: bbr00020
Entry
bbr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bordetella bronchiseptica RB50
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bbr00020  Citrate cycle (TCA cycle)
bbr00020

Module
bbr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bbr00020]
bbr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bbr00020]
bbr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bbr00020]
bbr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bbr00020]
bbr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bbr00020]
Other DBs
GO: 0006099
Organism
Bordetella bronchiseptica RB50 [GN:bbr]
Gene
BB3677  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
BB2822  conserved hypothetical protein [KO:K01647] [EC:2.3.3.1]
BB1342  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BB1844  acnA; putative aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BB1850  acnB; putative aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BB3924  icd; isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
BB3669  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BB3668  odhB; 2-oxoglutarate dehydrogenase complex, E2 component [KO:K00658] [EC:2.3.1.61]
BB3010  putative pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
BB4695  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BB2538  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BB3667  odhL; 2-oxoglutarate dehydrogenase complex, E3 component [KO:K00382] [EC:1.8.1.4]
BB2082  sucD; succinyl-CoA synthetase, alpha chain [KO:K01902] [EC:6.2.1.5]
BB2081  sucC; Succinyl-CoA synthetase, beta chain [KO:K01903] [EC:6.2.1.5]
BB1861  putative acyl-CoA transferase [KO:K18118] [EC:2.8.3.18]
BB3680  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BB3679  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BB3682  sdhC; succinate dehydrogenase cytochrome B subunit [KO:K00241]
BB3681  sdhD; succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
BB4081  putative fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BB0356  putative dehydratase [KO:K01677] [EC:4.2.1.2]
BB0355  conserved hypothetical protein [KO:K01678] [EC:4.2.1.2]
BB4054  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BB3684  mdH; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BB0610  putative pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BB2434  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
BB2536  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
BB3672  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
BB4703  probable 2-oxo acid dehydrogenases acyltransferase [KO:K00627] [EC:2.3.1.12]
BB2537  aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bbr00010  Glycolysis / Gluconeogenesis
bbr00053  Ascorbate and aldarate metabolism
bbr00061  Fatty acid biosynthesis
bbr00071  Fatty acid degradation
bbr00190  Oxidative phosphorylation
bbr00220  Arginine biosynthesis
bbr00250  Alanine, aspartate and glutamate metabolism
bbr00280  Valine, leucine and isoleucine degradation
bbr00350  Tyrosine metabolism
bbr00470  D-Amino acid metabolism
bbr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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