KEGG   PATHWAY: bbx00020
Entry
bbx00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bordetella bronchiseptica S798
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bbx00020  Citrate cycle (TCA cycle)
bbx00020

Module
bbx_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bbx00020]
bbx_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bbx00020]
bbx_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bbx00020]
bbx_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bbx00020]
bbx_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bbx00020]
Other DBs
GO: 0006099
Organism
Bordetella bronchiseptica S798 [GN:bbx]
Gene
BBS798_3456  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
BBS798_2652  citrate synthase [KO:K01647] [EC:2.3.3.1]
BBS798_1304  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BBS798_1745  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BBS798_1751  acnB; 2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
BBS798_3704  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BBS798_3448  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BBS798_3447  odhB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BBS798_4471  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BBS798_2369  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BBS798_2840  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BBS798_3446  odhL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BBS798_1981  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
BBS798_1980  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
BBS798_1762  acyl-CoA transferase [KO:K18118] [EC:2.8.3.18]
BBS798_3459  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BBS798_3458  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BBS798_3461  sdhC; succinate dehydrogenase cytochrome B subunit [KO:K00241]
BBS798_3460  sdhD; succinate dehydrogenase hydrophobic membraneanchor protein [KO:K00242]
BBS798_3874  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BBS798_0351  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
BBS798_0350  hypothetical protein [KO:K01678] [EC:4.2.1.2]
BBS798_3847  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BBS798_3463  mdH; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BBS798_0584  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BBS798_2273  pckG; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
BBS798_2367  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
BBS798_3451  aceE; 2-oxoacid dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
BBS798_4479  2-oxo acid dehydrogenase acyltransferase [KO:K00627] [EC:2.3.1.12]
BBS798_2368  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bbx00010  Glycolysis / Gluconeogenesis
bbx00053  Ascorbate and aldarate metabolism
bbx00061  Fatty acid biosynthesis
bbx00071  Fatty acid degradation
bbx00190  Oxidative phosphorylation
bbx00220  Arginine biosynthesis
bbx00250  Alanine, aspartate and glutamate metabolism
bbx00280  Valine, leucine and isoleucine degradation
bbx00350  Tyrosine metabolism
bbx00470  D-Amino acid metabolism
bbx00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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