KEGG   PATHWAY: bcai00020
Entry
bcai00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Paraburkholderia caribensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bcai00020  Citrate cycle (TCA cycle)
bcai00020

Module
bcai_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bcai00020]
bcai_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bcai00020]
bcai_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bcai00020]
bcai_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bcai00020]
bcai_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bcai00020]
Other DBs
GO: 0006099
Organism
Paraburkholderia caribensis [GN:bcai]
Gene
K788_0001960  Citrate synthase [KO:K01647] [EC:2.3.3.1]
K788_0003040  citrate synthase [KO:K01647] [EC:2.3.3.1]
K788_0005914  citrate synthase [KO:K01647] [EC:2.3.3.1]
K788_0002072  Citrate synthase [KO:K01647] [EC:2.3.3.1]
K788_0000943  Aconitate hydratase/2-methylisocitrate dehydratase [KO:K01681] [EC:4.2.1.3]
K788_0006079  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
K788_0003188  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
K788_0005896  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
K788_0002415  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
K788_0005998  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
K788_0002416  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
K788_0002417  Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
K788_0007470  Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
K788_0002812  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
K788_0005302  Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
K788_0006747  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
K788_0005303  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
K788_0006748  Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
K788_0008530  Propionyl-CoA:succinyl-CoA transferase [KO:K18118] [EC:2.8.3.18]
K788_0000953  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
K788_0002052  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
K788_0000954  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
K788_0002053  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
K788_0000951  succinate dehydrogenase subunit C [KO:K00241]
K788_0002050  succinate dehydrogenase subunit C [KO:K00241]
K788_0000952  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
K788_0002051  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
K788_0002226  Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
K788_0003436  fumarase, class II [KO:K01679] [EC:4.2.1.2]
K788_0001358  fumarase, class II [KO:K01679] [EC:4.2.1.2]
K788_0000949  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
K788_0003515  Phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
K788_0002256  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
K788_0007468  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
K788_0000006  Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
K788_0007469  Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bcai00010  Glycolysis / Gluconeogenesis
bcai00053  Ascorbate and aldarate metabolism
bcai00061  Fatty acid biosynthesis
bcai00071  Fatty acid degradation
bcai00190  Oxidative phosphorylation
bcai00220  Arginine biosynthesis
bcai00250  Alanine, aspartate and glutamate metabolism
bcai00280  Valine, leucine and isoleucine degradation
bcai00350  Tyrosine metabolism
bcai00470  D-Amino acid metabolism
bcai00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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