KEGG   PATHWAY: bcef00020
Entry
bcef00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bacillus cereus FT9
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bcef00020  Citrate cycle (TCA cycle)
bcef00020

Module
bcef_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bcef00020]
bcef_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bcef00020]
bcef_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bcef00020]
bcef_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bcef00020]
bcef_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bcef00020]
Other DBs
GO: 0006099
Organism
Bacillus cereus FT9 [GN:bcef]
Gene
BcrFT9_01862  2-methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
BcrFT9_03642  citrate synthase [KO:K01659] [EC:2.3.3.5]
BcrFT9_02760  Aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BcrFT9_03641  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BcrFT9_01073  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BcrFT9_02182  Dihydrolipoamide dehydrogenase of acetoin dehydrogenase [KO:K00382] [EC:1.8.1.4]
BcrFT9_03083  Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex [KO:K00382] [EC:1.8.1.4]
BcrFT9_03263  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BcrFT9_02903  2-oxoglutarate oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BcrFT9_02902  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BcrFT9_02960  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
BcrFT9_02961  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
BcrFT9_01534  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
BcrFT9_03578  Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BcrFT9_03577  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BcrFT9_03579  succinate dehydrogenase subunit C [KO:K00241]
BcrFT9_00449  Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
BcrFT9_01454  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BcrFT9_03640  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BcrFT9_02330  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BcrFT9_03061  Pyruvate carboxyl transferase [KO:K01958] [EC:6.4.1.1]
BcrFT9_03791  Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BcrFT9_03086  pyruvate dehydrogenase (acetyl-transferring) [KO:K00161] [EC:1.2.4.1]
BcrFT9_03085  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
BcrFT9_02183  Dihydrolipoamide acetyltransferase component [KO:K00627] [EC:2.3.1.12]
BcrFT9_03084  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bcef00010  Glycolysis / Gluconeogenesis
bcef00053  Ascorbate and aldarate metabolism
bcef00061  Fatty acid biosynthesis
bcef00071  Fatty acid degradation
bcef00190  Oxidative phosphorylation
bcef00220  Arginine biosynthesis
bcef00250  Alanine, aspartate and glutamate metabolism
bcef00280  Valine, leucine and isoleucine degradation
bcef00350  Tyrosine metabolism
bcef00470  D-Amino acid metabolism
bcef00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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