KEGG   PATHWAY: bceo00020
Entry
bceo00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia cenocepacia H111
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bceo00020  Citrate cycle (TCA cycle)
bceo00020

Module
bceo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bceo00020]
bceo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bceo00020]
bceo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bceo00020]
bceo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bceo00020]
bceo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bceo00020]
Other DBs
GO: 0006099
Organism
Burkholderia cenocepacia H111 [GN:bceo]
Gene
I35_4730  similar to Citrate synthase [KO:K01647] [EC:2.3.3.1]
I35_2604  hypothetical protein [KO:K01647] [EC:2.3.3.1]
I35_4892  gltA; Citrate synthase (si) [KO:K01647] [EC:2.3.3.1]
I35_4881  acnA; Aconitate hydratase @ 2-methylisocitrate dehydratase [KO:K01681] [EC:4.2.1.3]
I35_5712  acnB; Aconitate hydratase(EC:4.2.1.3) [KO:K01682] [EC:4.2.1.3 4.2.1.99]
I35_2595  Isocitrate dehydrogenase [NADP]; Monomeric isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
I35_2596  Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
I35_1413  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
I35_1414  sucB; Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
I35_2136  putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
I35_1415  odhL; Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase [KO:K00382] [EC:1.8.1.4]
I35_1126  lpdV; Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase [KO:K00382] [EC:1.8.1.4]
I35_2713  sucD; Succinyl-CoA ligase [ADP-forming] alpha chain [KO:K01902] [EC:6.2.1.5]
I35_2714  sucC; Succinyl-CoA ligase [ADP-forming] beta chain [KO:K01903] [EC:6.2.1.5]
I35_5099  Acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
I35_4889  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
I35_7556  Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
I35_4890  sdhB; Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
I35_4887  Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
I35_4888  Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
I35_2213  Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
I35_0958  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
I35_4885  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
I35_4174  mgo; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
I35_5439  pckG; Phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
I35_5769  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
I35_2138  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
I35_2137  pdhB; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
I35_1828  acoC; Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bceo00010  Glycolysis / Gluconeogenesis
bceo00053  Ascorbate and aldarate metabolism
bceo00061  Fatty acid biosynthesis
bceo00071  Fatty acid degradation
bceo00190  Oxidative phosphorylation
bceo00220  Arginine biosynthesis
bceo00250  Alanine, aspartate and glutamate metabolism
bceo00280  Valine, leucine and isoleucine degradation
bceo00350  Tyrosine metabolism
bceo00470  D-Amino acid metabolism
bceo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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