KEGG   PATHWAY: bdf00020
Entry
bdf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia diffusa
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bdf00020  Citrate cycle (TCA cycle)
bdf00020

Module
bdf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bdf00020]
bdf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bdf00020]
bdf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bdf00020]
bdf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bdf00020]
bdf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bdf00020]
Other DBs
GO: 0006099
Organism
Burkholderia diffusa [GN:bdf]
Gene
WI26_18435  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
WI26_12245  citrate synthase [KO:K01647] [EC:2.3.3.1]
WI26_28685  citrate synthase [KO:K01647] [EC:2.3.3.1]
WI26_18380  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
WI26_27090  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
WI26_12190  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
WI26_12195  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
WI26_06860  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
WI26_06865  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
WI26_06870  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
WI26_05720  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
WI26_10195  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
WI26_12795  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
WI26_12800  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
WI26_19350  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
WI26_18420  fumarate reductase [KO:K00239] [EC:1.3.5.1]
WI26_18425  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
WI26_27630  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
WI26_18410  succinate dehydrogenase [KO:K00241]
WI26_18415  succinate dehydrogenase [KO:K00242]
WI26_10595  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
WI26_04960  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
WI26_18400  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
WI26_16040  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
WI26_20995  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
WI26_10205  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
WI26_28385  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
WI26_28380  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
WI26_08705  acetoin dehydrogenase [KO:K00627] [EC:2.3.1.12]
WI26_10200  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
WI26_28375  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bdf00010  Glycolysis / Gluconeogenesis
bdf00053  Ascorbate and aldarate metabolism
bdf00061  Fatty acid biosynthesis
bdf00071  Fatty acid degradation
bdf00190  Oxidative phosphorylation
bdf00220  Arginine biosynthesis
bdf00250  Alanine, aspartate and glutamate metabolism
bdf00280  Valine, leucine and isoleucine degradation
bdf00350  Tyrosine metabolism
bdf00470  D-Amino acid metabolism
bdf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system