KEGG   PATHWAY: bdf00630
Entry
bdf00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Burkholderia diffusa
Class
Metabolism; Carbohydrate metabolism
Pathway map
bdf00630  Glyoxylate and dicarboxylate metabolism
bdf00630

Module
bdf_M00012  Glyoxylate cycle [PATH:bdf00630]
bdf_M00621  Glycine cleavage system [PATH:bdf00630]
Other DBs
GO: 0046487 0043648
Organism
Burkholderia diffusa [GN:bdf]
Gene
WI26_09720  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
WI26_21030  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
WI26_06045  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
WI26_10580  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
WI26_28390  acetyl-CoA synthetase [KO:K01895] [EC:6.2.1.1]
WI26_23850  AMP-dependent synthetase [KO:K01895] [EC:6.2.1.1]
WI26_29530  acetyl-coenzyme A synthetase [KO:K01895] [EC:6.2.1.1]
WI26_30110  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
WI26_09740  malate synthase [KO:K01638] [EC:2.3.3.9]
WI26_26645  malate synthase G [KO:K01638] [EC:2.3.3.9]
WI26_18400  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
WI26_18435  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
WI26_12245  citrate synthase [KO:K01647] [EC:2.3.3.1]
WI26_28685  citrate synthase [KO:K01647] [EC:2.3.3.1]
WI26_26095  citrate synthase/methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
WI26_18380  acnA; aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
WI26_27090  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
WI26_08460  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
WI26_09040  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
WI26_13375  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
WI26_21250  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
WI26_21280  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
WI26_26975  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
WI26_30120  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
WI26_08455  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
WI26_13370  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
WI26_28185  beta-ketoacyl-ACP reductase [KO:K00023] [EC:1.1.1.36]
WI26_03150  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
WI26_26625  glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.99.14]
WI26_03145  glcE; glycolate oxidase [KO:K11472] [EC:1.1.99.14]
WI26_26630  glcE; glycolate oxidase [KO:K11472] [EC:1.1.99.14]
WI26_03140  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
WI26_26635  glcF; glycolate oxidase iron-sulfur subunit [KO:K11473] [EC:1.1.99.14]
WI26_00075  catalase [KO:K03781] [EC:1.11.1.6]
WI26_14270  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
WI26_28875  glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.79 1.1.1.81]
WI26_08230  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
WI26_05035  D-glycerate dehydrogenase [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
WI26_08080  glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
WI26_02200  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
WI26_05080  HAD family hydrolase [KO:K01091] [EC:3.1.3.18]
WI26_23505  hydrolase [KO:K01091] [EC:3.1.3.18]
WI26_10265  glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
WI26_10415  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
WI26_14435  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
WI26_23595  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
WI26_03515  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
WI26_16470  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
WI26_24470  glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
WI26_00720  glycine dehydrogenase (aminomethyl-transferring) [KO:K00281] [EC:1.4.4.2]
WI26_00730  glycine cleavage system protein T [KO:K00605] [EC:2.1.2.10]
WI26_06870  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
WI26_05720  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
WI26_10195  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
WI26_00725  glycine cleavage system protein H [KO:K02437]
WI26_08900  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
WI26_08905  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
WI26_09155  glycerate kinase [KO:K00865] [EC:2.7.1.165]
WI26_16280  aldehyde dehydrogenase [KO:K07248] [EC:1.2.1.22 1.2.1.21]
WI26_15415  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
WI26_17395  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
WI26_02810  2-dehydro-3-deoxyphosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
WI26_21925  cupin [KO:K01569] [EC:4.1.1.2]
WI26_04645  formate dehydrogenase [KO:K00126] [EC:1.17.1.9]
WI26_04650  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
WI26_18680  sulfate ABC transporter substrate-binding protein [KO:K00123] [EC:1.17.1.9]
WI26_18685  formate dehydrogenase [KO:K00123] [EC:1.17.1.9]
WI26_04655  formate dehydrogenase [KO:K00124]
WI26_18690  formate dehydrogenase [KO:K00124]
WI26_04660  formate dehydrogenase [KO:K00127]
WI26_18695  formate dehydrogenase [KO:K00127]
WI26_08100  esterase [KO:K01432] [EC:3.5.1.9]
WI26_12455  kynurenine formamidase [KO:K07130] [EC:3.5.1.9]
WI26_13410  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
WI26_24415  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
WI26_10425  N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bdf00010  Glycolysis / Gluconeogenesis
bdf00020  Citrate cycle (TCA cycle)
bdf00030  Pentose phosphate pathway
bdf00053  Ascorbate and aldarate metabolism
bdf00071  Fatty acid degradation
bdf00230  Purine metabolism
bdf00250  Alanine, aspartate and glutamate metabolism
bdf00260  Glycine, serine and threonine metabolism
bdf00620  Pyruvate metabolism
bdf00710  Carbon fixation by Calvin cycle
bdf00750  Vitamin B6 metabolism
bdf00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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