KEGG   PATHWAY: bfn00020
Entry
bfn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Paraburkholderia fungorum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bfn00020  Citrate cycle (TCA cycle)
bfn00020

Module
bfn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bfn00020]
bfn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bfn00020]
bfn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bfn00020]
bfn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bfn00020]
bfn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bfn00020]
Other DBs
GO: 0006099
Organism
Paraburkholderia fungorum [GN:bfn]
Gene
OI25_6901  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
OI25_5307  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
OI25_2241  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
OI25_3022  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
OI25_6093  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
OI25_5319  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
OI25_6239  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
OI25_2256  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
OI25_8  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
OI25_7  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
OI25_6  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OI25_2839  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
OI25_2127  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
OI25_2126  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
OI25_4317  succinate CoA transferase family protein [KO:K18118] [EC:2.8.3.18]
OI25_5310  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
OI25_7447  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
OI25_5309  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
OI25_5312  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
OI25_5311  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
OI25_359  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
OI25_2473  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
OI25_5314  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OI25_7902  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
OI25_1393  phosphoenolpyruvate carboxykinase family protein [KO:K01596] [EC:4.1.1.32]
OI25_2837  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
OI25_2838  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bfn00010  Glycolysis / Gluconeogenesis
bfn00053  Ascorbate and aldarate metabolism
bfn00061  Fatty acid biosynthesis
bfn00071  Fatty acid degradation
bfn00190  Oxidative phosphorylation
bfn00220  Arginine biosynthesis
bfn00250  Alanine, aspartate and glutamate metabolism
bfn00280  Valine, leucine and isoleucine degradation
bfn00350  Tyrosine metabolism
bfn00470  D-Amino acid metabolism
bfn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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