KEGG   PATHWAY: bgd00020
Entry
bgd00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia gladioli BSR3
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bgd00020  Citrate cycle (TCA cycle)
bgd00020

Module
bgd_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bgd00020]
bgd_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bgd00020]
bgd_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bgd00020]
bgd_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bgd00020]
bgd_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bgd00020]
Other DBs
GO: 0006099
Organism
Burkholderia gladioli BSR3 [GN:bgd]
Gene
bgla_1g14960  citrate synthase [KO:K01647] [EC:2.3.3.1]
bgla_1g32410  citrate synthase [KO:K01647] [EC:2.3.3.1]
bgla_2g18260  citrate synthase I [KO:K01647] [EC:2.3.3.1]
bgla_2g24090  aconitate hydratase domain-containing protein [KO:K01681] [EC:4.2.1.3]
bgla_2g18370  Aconitase A [KO:K01681] [EC:4.2.1.3]
bgla_1g19470  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
bgla_1g32290  Isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
bgla_1g32300  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
bgla_2g07980  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
bgla_1g18060  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
bgla_1g18070  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
bgla_2g03070  hypothetical protein [KO:K00382] [EC:1.8.1.4]
bgla_1g28040  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
bgla_1g18080  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
bgla_1g33390  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
bgla_1g33400  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
bgla_2g16750  Coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
bgla_2g18290  Succinate dehydrogenase, flavoproteinsubunit [KO:K00239] [EC:1.3.5.1]
bgla_2g18280  Succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
bgla_2g20220  Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [KO:K00240] [EC:1.3.5.1]
bgla_2g18310  Succinate dehydrogenase, cytochrome b subunit [KO:K00241]
bgla_2g18300  Succinate dehydrogenase, cytochrome b subunit [KO:K00242]
bgla_1g28710  putative fumarate hydratase [KO:K01676] [EC:4.2.1.2]
bgla_1g26260  tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit [KO:K01677] [EC:4.2.1.2]
bgla_1g26250  fumarate hydratase class I beta subunit [KO:K01678] [EC:4.2.1.2]
bgla_1g10100  Fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
bgla_2g27630  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
bgla_2g18330  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
bgla_1g13120  Phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
bgla_2g09250  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
bgla_1g28060  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
bgla_1g28050  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bgd00010  Glycolysis / Gluconeogenesis
bgd00053  Ascorbate and aldarate metabolism
bgd00061  Fatty acid biosynthesis
bgd00071  Fatty acid degradation
bgd00190  Oxidative phosphorylation
bgd00220  Arginine biosynthesis
bgd00250  Alanine, aspartate and glutamate metabolism
bgd00280  Valine, leucine and isoleucine degradation
bgd00350  Tyrosine metabolism
bgd00470  D-Amino acid metabolism
bgd00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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