KEGG   PATHWAY: bgj00020
Entry
bgj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brenneria goodwinii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bgj00020  Citrate cycle (TCA cycle)
bgj00020

Module
bgj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bgj00020]
bgj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bgj00020]
bgj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bgj00020]
bgj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bgj00020]
bgj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bgj00020]
Other DBs
GO: 0006099
Organism
Brenneria goodwinii [GN:bgj]
Gene
AWC36_20625  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AWC36_11935  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AWC36_06565  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AWC36_23005  aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AWC36_08460  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AWC36_11910  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
AWC36_11905  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AWC36_22975  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AWC36_23060  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AWC36_11895  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AWC36_11900  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AWC36_11920  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AWC36_11915  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AWC36_11930  succinate dehydrogenase [KO:K00241]
AWC36_11925  sdhD; succinate dehydrogenase [KO:K00242]
AWC36_21315  fumarate reductase [KO:K00244] [EC:1.3.5.1]
AWC36_22640  fumarate reductase [KO:K00244] [EC:1.3.5.1]
AWC36_21310  fumarate reductase [KO:K00245] [EC:1.3.5.1]
AWC36_22655  fumarate reductase [KO:K00245] [EC:1.3.5.1]
AWC36_21305  fumarate reductase [KO:K00246]
AWC36_22650  succinate dehydrogenase [KO:K00246]
AWC36_21300  fumarate reductase [KO:K00247]
AWC36_22645  succinate dehydrogenase [KO:K00247]
AWC36_18665  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AWC36_14095  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AWC36_07665  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AWC36_15500  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AWC36_02915  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AWC36_20695  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AWC36_22965  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
AWC36_22970  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
AWC36_23055  diaminohydroxyphosphoribosylaminopyrimidine deaminase [KO:K00627] [EC:2.3.1.12]
AWC36_11230  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
AWC36_11225  2-ketoisovalerate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
AWC36_11240  hypothetical protein [KO:K00172] [EC:1.2.7.1]
AWC36_11235  hypothetical protein [KO:K00171] [EC:1.2.7.1]
AWC36_14555  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bgj00010  Glycolysis / Gluconeogenesis
bgj00053  Ascorbate and aldarate metabolism
bgj00061  Fatty acid biosynthesis
bgj00071  Fatty acid degradation
bgj00190  Oxidative phosphorylation
bgj00220  Arginine biosynthesis
bgj00250  Alanine, aspartate and glutamate metabolism
bgj00280  Valine, leucine and isoleucine degradation
bgj00350  Tyrosine metabolism
bgj00470  D-Amino acid metabolism
bgj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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