KEGG   PATHWAY: bgoe00020
Entry
bgoe00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Brevundimonas goettingensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bgoe00020  Citrate cycle (TCA cycle)
bgoe00020

Module
bgoe_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bgoe00020]
bgoe_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bgoe00020]
bgoe_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bgoe00020]
bgoe_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bgoe00020]
bgoe_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bgoe00020]
Other DBs
GO: 0006099
Organism
Brevundimonas goettingensis [GN:bgoe]
Gene
IFJ75_06920  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
IFJ75_17060  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
IFJ75_12540  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IFJ75_16115  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
IFJ75_16120  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
IFJ75_06760  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IFJ75_14830  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IFJ75_15640  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IFJ75_16110  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
IFJ75_16090  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
IFJ75_16390  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
IFJ75_16395  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
IFJ75_16380  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
IFJ75_16385  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
IFJ75_07405  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
IFJ75_04240  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IFJ75_16340  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IFJ75_03815  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
IFJ75_06735  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
IFJ75_06740  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
IFJ75_06750  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bgoe00010  Glycolysis / Gluconeogenesis
bgoe00053  Ascorbate and aldarate metabolism
bgoe00061  Fatty acid biosynthesis
bgoe00071  Fatty acid degradation
bgoe00190  Oxidative phosphorylation
bgoe00220  Arginine biosynthesis
bgoe00250  Alanine, aspartate and glutamate metabolism
bgoe00280  Valine, leucine and isoleucine degradation
bgoe00350  Tyrosine metabolism
bgoe00470  D-Amino acid metabolism
bgoe00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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