KEGG   PATHWAY: bgu00020
Entry
bgu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia glumae LMG 2196 = ATCC 33617
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bgu00020  Citrate cycle (TCA cycle)
bgu00020

Module
bgu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bgu00020]
bgu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bgu00020]
bgu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bgu00020]
bgu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bgu00020]
bgu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bgu00020]
Other DBs
GO: 0006099
Organism
Burkholderia glumae LMG 2196 = ATCC 33617 [GN:bgu]
Gene
KS03_5088  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
KS03_5099  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
KS03_3991  aconitase family protein [KO:K01681] [EC:4.2.1.3]
KS03_4466  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KS03_343  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
KS03_344  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
KS03_2849  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
KS03_3809  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
KS03_2848  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
KS03_2847  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KS03_3384  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KS03_3247  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KS03_447  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
KS03_448  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
KS03_4914  succinate CoA transferase family protein [KO:K18118] [EC:2.8.3.18]
KS03_5091  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KS03_5090  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
KS03_5209  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
KS03_5093  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
KS03_5092  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
KS03_3310  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
KS03_1855  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
KS03_5095  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KS03_2047  phosphoenolpyruvate carboxykinase family protein [KO:K01596] [EC:4.1.1.32]
KS03_1989  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KS03_3249  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
KS03_3248  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bgu00010  Glycolysis / Gluconeogenesis
bgu00053  Ascorbate and aldarate metabolism
bgu00061  Fatty acid biosynthesis
bgu00071  Fatty acid degradation
bgu00190  Oxidative phosphorylation
bgu00220  Arginine biosynthesis
bgu00250  Alanine, aspartate and glutamate metabolism
bgu00280  Valine, leucine and isoleucine degradation
bgu00350  Tyrosine metabolism
bgu00470  D-Amino acid metabolism
bgu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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