KEGG   PATHWAY: bhl00020
Entry
bhl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacteroides helcogenes
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bhl00020  Citrate cycle (TCA cycle)
bhl00020

Module
bhl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bhl00020]
bhl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bhl00020]
bhl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bhl00020]
Other DBs
GO: 0006099
Organism
Bacteroides helcogenes [GN:bhl]
Gene
Bache_3313  Citrate synthase [KO:K01659] [EC:2.3.3.5]
Bache_3315  aconitase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Bache_3314  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
Bache_0734  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Bache_0923  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Bache_2871  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Bache_0922  2-oxoglutarate synthase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Bache_2873  thiamine pyrophosphate TPP-binding domain-containing protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Bache_2874  2-oxoglutarate ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
Bache_2870  putative ferredoxin [KO:K00176] [EC:1.2.7.3]
Bache_0806  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Bache_0805  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
Bache_0807  succinate dehydrogenase subunit C [KO:K00241]
Bache_1195  fumarase [KO:K01676] [EC:4.2.1.2]
Bache_0270  Lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Bache_0106  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Bache_2629  Pyruvate carboxylase [KO:K01960] [EC:6.4.1.1]
Bache_3078  Pyruvate carboxylase [KO:K01960] [EC:6.4.1.1]
Bache_0916  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Bache_3115  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bhl00010  Glycolysis / Gluconeogenesis
bhl00053  Ascorbate and aldarate metabolism
bhl00061  Fatty acid biosynthesis
bhl00190  Oxidative phosphorylation
bhl00220  Arginine biosynthesis
bhl00250  Alanine, aspartate and glutamate metabolism
bhl00280  Valine, leucine and isoleucine degradation
bhl00350  Tyrosine metabolism
bhl00470  D-Amino acid metabolism
bhl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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