KEGG   PATHWAY: biz00020
Entry
biz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brenneria izadpanahii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
biz00020  Citrate cycle (TCA cycle)
biz00020

Module
biz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:biz00020]
biz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:biz00020]
biz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:biz00020]
biz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:biz00020]
biz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:biz00020]
Other DBs
GO: 0006099
Organism
Brenneria izadpanahii [GN:biz]
Gene
HC231_16550  citrate synthase [KO:K01647] [EC:2.3.3.1]
HC231_01845  citrate synthase [KO:K01647] [EC:2.3.3.1]
HC231_12095  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
HC231_03795  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HC231_10075  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HC231_16525  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HC231_16520  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HC231_03745  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HC231_16510  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HC231_16515  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HC231_16535  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HC231_16530  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HC231_16545  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
HC231_16540  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
HC231_02560  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
HC231_03435  FAD-binding protein [KO:K00244] [EC:1.3.5.1]
HC231_02555  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
HC231_03450  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
HC231_02550  frdC; fumarate reductase subunit FrdC [KO:K00246]
HC231_03445  succinate dehydrogenase [KO:K00246]
HC231_02545  frdD; fumarate reductase subunit FrdD [KO:K00247]
HC231_03440  succinate dehydrogenase [KO:K00247]
HC231_18920  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HC231_23670  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HC231_10955  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
HC231_20390  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HC231_06950  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
HC231_01915  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
HC231_03735  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HC231_03740  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
HC231_15820  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
HC231_15815  pyruvate synthase subunit beta [KO:K00170] [EC:1.2.7.1]
HC231_15830  pyruvate ferredoxin oxidoreductase [KO:K00172] [EC:1.2.7.1]
HC231_15825  4Fe-4S binding protein [KO:K00171] [EC:1.2.7.1]
HC231_19325  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
biz00010  Glycolysis / Gluconeogenesis
biz00053  Ascorbate and aldarate metabolism
biz00061  Fatty acid biosynthesis
biz00071  Fatty acid degradation
biz00190  Oxidative phosphorylation
biz00220  Arginine biosynthesis
biz00250  Alanine, aspartate and glutamate metabolism
biz00280  Valine, leucine and isoleucine degradation
biz00350  Tyrosine metabolism
biz00470  D-Amino acid metabolism
biz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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