KEGG   PATHWAY: blep00020
Entry
blep00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Beggiatoa leptomitoformis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
blep00020  Citrate cycle (TCA cycle)
blep00020

Module
blep_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:blep00020]
blep_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:blep00020]
blep_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:blep00020]
blep_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:blep00020]
Other DBs
GO: 0006099
Organism
Beggiatoa leptomitoformis [GN:blep]
Gene
AL038_13740  citrate synthase [KO:K01647] [EC:2.3.3.1]
AL038_04950  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AL038_06875  icd; isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
AL038_03320  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AL038_03315  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
AL038_03310  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AL038_03490  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AL038_16370  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AL038_16365  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AL038_05500  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AL038_05495  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AL038_05510  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
AL038_05505  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
AL038_09700  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AL038_03325  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AL038_16550  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
AL038_00885  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
AL038_00880  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
blep00010  Glycolysis / Gluconeogenesis
blep00053  Ascorbate and aldarate metabolism
blep00061  Fatty acid biosynthesis
blep00071  Fatty acid degradation
blep00190  Oxidative phosphorylation
blep00220  Arginine biosynthesis
blep00250  Alanine, aspartate and glutamate metabolism
blep00280  Valine, leucine and isoleucine degradation
blep00350  Tyrosine metabolism
blep00470  D-Amino acid metabolism
blep00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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