KEGG   PATHWAY: bmn00020
Entry
bmn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia mallei NCTC 10247
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bmn00020  Citrate cycle (TCA cycle)
bmn00020

Module
bmn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bmn00020]
bmn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bmn00020]
bmn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bmn00020]
bmn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bmn00020]
bmn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bmn00020]
Other DBs
GO: 0006099
Organism
Burkholderia mallei NCTC 10247 [GN:bmn]
Gene
BMA10247_A0504  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BMA10247_2135  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
BMA10247_A0493  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BMA10247_0132  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
BMA10247_1000  sucA; 2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
BMA10247_1001  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex [KO:K00658] [EC:2.3.1.61]
BMA10247_A2299  lpdA_3; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BMA10247_1500  lpdA_2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BMA10247_1002  lpdA_1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BMA10247_0013  sucD; succinyl-CoA synthase, alpha subunit [KO:K01902] [EC:6.2.1.5]
BMA10247_0014  sucC; succinyl-CoA synthase, beta subunit [KO:K01903] [EC:6.2.1.5]
BMA10247_A2021  coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
BMA10247_A0501  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BMA10247_A0502  sdhB; succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BMA10247_A2285  sdhB-2; succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BMA10247_A0499  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BMA10247_A0500  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BMA10247_A2058  hydro-lyase, Fe-S type, tartrate/fumarate family [KO:K01676] [EC:4.2.1.2]
BMA10247_0259  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BMA10247_A0497  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BMA10247_0533  pckG; phosphoenolpyruvate carboxykinase (ATP) [KO:K01596] [EC:4.1.1.32]
BMA10247_A0512  2-oxo-acid dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
BMA10247_1502  pdhA; pyruvate dehydrogenase complex E1 component [KO:K00163] [EC:1.2.4.1]
BMA10247_1501  aceF; dihydrolipoyllysine-residue acetyltransferase E2 component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bmn00010  Glycolysis / Gluconeogenesis
bmn00053  Ascorbate and aldarate metabolism
bmn00061  Fatty acid biosynthesis
bmn00071  Fatty acid degradation
bmn00190  Oxidative phosphorylation
bmn00220  Arginine biosynthesis
bmn00250  Alanine, aspartate and glutamate metabolism
bmn00280  Valine, leucine and isoleucine degradation
bmn00350  Tyrosine metabolism
bmn00470  D-Amino acid metabolism
bmn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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